Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00659 ATGGTGTTTTGTTGCTGCAATGATATAGATATGGCTCCAATGGTGCCGGAGACTCCACCGTTTTGTTTATCTGCTGAGTCCTTACGATTGGCTTCCTTTCCTGCCGCCACTCACCCACCACTCAACTCAGTTGCACAATCAAGATCTCATGTTCTTAACAAGCAGAGGTCCTTGTCTCCGGCTCCGCCTCCACAAACTACACTTTCCGATGCATTTAAGAGTGCACGTACCGATCAGAAGCGGTTTTCAACGCCGCCGCCTCAGAGGAAGGCACCTGGAAAAGAGAAGGGTAGAAGACTATTTAGTAAAAAAGCCAAGGAGCGCAATTCCTTAAAGGAAGAGAAGTTAAAAGGCCTTCTGAGGCATTTTGCCTCATTTAAAGGCAATGGGAAGTCCAAGTTCAAGGAGTCTTCTTGGACAAGGTTTTTTGAGCACAATGGGGGGAAGGTCACCGCTGTCGAGGCTGTAGATGAATCGTCTATTGACCTGTCCAAGTTGAGTTTCGGGCATAAATTTGCTTTCGGAGCTCATAGTCGGCTTTACCATGGACTTTACGAAGATAACGTTGTTGCTGCTAAGATGATCAATCTTCCAGTCGATGACGAAAATGGAGAACTCGCAGGTCGCTTAAAAAAGCAGTTTGATAGGGAAGTAACCCTTTTATCTCGTCTCCGCCATCCCAACGTTATAAAGTTGGTAGCAGCCGTGAAAATGCCACCCGTTTATTGCATCATCACTGAGTATCTACCTCTGGGTTCCTTAAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCATTGCAAAAACTATTTGCTATTGCCTTGGACATTGCTCGTGGGATGGAATACATTCACTCACAAGGCGTCGTTCATCGGGATCTCAAACCTGAAAACGTTCTTATTGATGAAAACTTTTGTCTAAAGATTGCCGATTTCGGCATCGCTTGTGAGGAGGCACGTTGTGATACACTAGCAGAGGACCCTGGAACTTTTCGTTGGATGGCCCCCGAGATGATCAAACGTAAACCTTATGGAAGAAAGGTTGATATGTACAGCTTCGGACTCATCCTGTGGGAATTAGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCCATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGCGATCCCGAGCGAGTGTCCTCCAGTGATGCAGGCGTTAATGGAGCAATGTTGGTCCACACAACCAGAAGAGAGGCCGGAGTTTTGGCAGGTGGTAAAAGTATTAGAGCAGCTTGAGAGTTGTGTTGGGGGAGATGGTGAAGTGTAG 1308 45.95 MVFCCCNDIDMAPMVPETPPFCLSAESLRLASFPAATHPPLNSVAQSRSHVLNKQRSLSPAPPPQTTLSDAFKSARTDQKRFSTPPPQRKAPGKEKGRRLFSKKAKERNSLKEEKLKGLLRHFASFKGNGKSKFKESSWTRFFEHNGGKVTAVEAVDESSIDLSKLSFGHKFAFGAHSRLYHGLYEDNVVAAKMINLPVDDENGELAGRLKKQFDREVTLLSRLRHPNVIKLVAAVKMPPVYCIITEYLPLGSLRAYLHKLEKKSLPLQKLFAIALDIARGMEYIHSQGVVHRDLKPENVLIDENFCLKIADFGIACEEARCDTLAEDPGTFRWMAPEMIKRKPYGRKVDMYSFGLILWELVAGKIPYEDMTPIQAAFAVVDKNIRPAIPSECPPVMQALMEQCWSTQPEERPEFWQVVKVLEQLESCVGGDGEV 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6946045 6948900 + CmoCh13G006590.1 Cmo13g00659 394714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00659 435 SUPERFAMILY Protein kinase-like (PK-like) 153 422 IPR011009 -
Cmo13g00659 435 MobiDBLite consensus disorder prediction 44 84 - -
Cmo13g00659 435 MobiDBLite consensus disorder prediction 44 107 - -
Cmo13g00659 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Cmo13g00659 435 MobiDBLite consensus disorder prediction 91 107 - -
Cmo13g00659 435 CDD STKc_MAP3K-like 173 422 - -
Cmo13g00659 435 SMART serkin_6 166 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00659 435 Gene3D Phosphorylase Kinase; domain 1 154 249 - -
Cmo13g00659 435 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 42 434 - -
Cmo13g00659 435 Gene3D Transferase(Phosphotransferase) domain 1 250 429 - -
Cmo13g00659 435 Pfam Protein tyrosine and serine/threonine kinase 167 422 IPR001245 GO:0004672|GO:0006468
Cmo13g00659 435 PANTHER TYROSINE KINASE FAMILY PROTEIN 42 434 - -
Cmo13g00659 435 ProSiteProfiles Protein kinase domain profile. 166 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00659 435 PRINTS Tyrosine kinase catalytic domain signature 393 415 IPR001245 GO:0004672|GO:0006468
Cmo13g00659 435 PRINTS Tyrosine kinase catalytic domain signature 246 259 IPR001245 GO:0004672|GO:0006468
Cmo13g00659 435 PRINTS Tyrosine kinase catalytic domain signature 330 340 IPR001245 GO:0004672|GO:0006468
Cmo13g00659 435 PRINTS Tyrosine kinase catalytic domain signature 284 302 IPR001245 GO:0004672|GO:0006468
Cmo13g00659 435 PRINTS Tyrosine kinase catalytic domain signature 349 371 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00659 Cmo-Chr13:6946045 Cmo13g00921 Cmo-Chr13:8137683 2.16E-106 dispersed
Cmo15g01338 Cmo-Chr15:9162567 Cmo13g00659 Cmo-Chr13:6946045 7.26E-24 dispersed
Cmo13g00659 Cmo-Chr13:6946045 Cmo18g00354 Cmo-Chr18:2315755 0 wgd
Cmo13g00659 Cmo-Chr13:6946045 Cmo03g01262 Cmo-Chr3:9665644 0 wgd
Cmo13g00659 Cmo-Chr13:6946045 Cmo07g00236 Cmo-Chr7:1172838 6.43E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74772 PF07714 PK_Tyr_Ser-Thr 7.00E-61 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00659 - - cmax:111495774 822.002