Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00661 ATGGCCGCTCTGAAACTCCCAATTCTTCTCCTCTCTTTCCCCGTTCTTTTCTGCTCCATATCCGCCCTTGATTTCGTCTTCAACGGCTTCAATTCCACCGATGTCTTCCTCTACGGCAACGCCACCATTGAATCCCGCATCCTCGCCCTCACCAACCAAACCAGTTTCTCAATCGGTCGCGCTCTGTACCCTTCCAAGATCCCCACTAGGGCTCCCAATTCCTCCCGCCTCTACTCTTTCTCCACTTCTTTCATCTTCGCCATGGCCCCTTACAGGGATACCCTTCCCGGACATGGCTTGGTTTTTATCTTTGTTCCGGAGACTGGGATTCACGGAACTGCCTCCGCTCAGAATTTGGGGTTTTTGAACTTCACCCTTAATGGGAACCCTAATAACCATGTCTTTGGAATTGAATTCGATGTGTTTGATAATGAGGAATTCAATGACCCCGACGACAATCATGTGGGAATCGACTTGAATTCCTTGACGTCTACCGCTACCAGAGAAGCTGGGTTTTGGTCCGACGATGGCTCGTTTAATAGGTTCCGGCTTAATAGCGGCGAAAATTATCAAGTCTGGATTGATTATTCCGATTTTCAGATGAATGTTACGATGGCTCCGGCGGGGATGAAGAGGCCACGGCGGCCGTTGATTAACGCCTCTCTGAATCTCTCCCATGTTTTCACCGACGAAATGTATGTGGGGTTTACGAGCTCTACAGGGCAGTTGGTTCAAGGCCACAACATTTTAGCCTGGAGTTTCAGTAACTCTAATTTTTCGTTGAGCGAGAGTTTGATTACCGCTGGATTGCCTTCCTTCGTCCTCCCAGAAGACCCGATTACTAAATCGAAGTGGTTCATCGCCGGAGTGACGGCCGGCGGATTCCTATTCGTTTTCTTCATAGCTACGAGTTTGGGGATTTTGATTGCAGACCACCGGAGGAGAGCGAGGGCAAGAGCGGAAATGGAAGACTGGGAATTGGAGTATTGGCCACACCGAATTCCATATCAAGAAATCGAATCGGCAACCAAAGGGTTTGCAGAAGAAAATGTCATCGGAATTGGAGGGAATGGGAAGGTGCATAAAGGGGTTTTGGCTGGGGGAGGTTCGGAAGTTGCAGTGAAACGAATTTCCCATGAAAACGACGGGATGCGAGAGTTCTTAGCTGAAATTTCGAGTATAGGGAGATTGAAGCACAGAAATCTAGTCAGTTTGAAAGGTTGGTGTAAGAAAGAGACTGGGAATTTCTTACTTGTCTATGATTACATGGAAAATGGTAGTTTAGACAAATGGGTATTTGATTGCGACGAGAGAAACATGTTGAGTTGCGAGGATCGAATTCGAGTATTGAAAAACGTAGCTTCCGGGGTCTTGTATTTACACGAAGGATGGGAATCAAAGGTCCTCCATAGGGACATAAAAGCTAGCAATGTATTGCTGGACAAAGACATGAATGGAAGACTAGGAGATTTTGGTTTGGCTCGAGTCCATAGCCACAACCAAGTAGCTAGCACGACTCGAATCGTTGGCACCATGGGCTATATAGCGCCCGAGTTGATTCGAACGGGACGAGCCTCGACACAATCAGACGTGTTTGGTTTTGGTGTTTTGATTTTGGAAGTAATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCACCATTAGTGGATTGGGTTCGACGATTGGCGGTTGAGGGGGAGATCACAGCAGCAGTCGACGAGCGACTGAAGAAGAAGGGCGGGTGGAACGAGGAGGAAGTCGAGAGAGTGTTGCATTTGGGATTGTTATGTGTACATCCAGACCCGAAAGCTCGACCGAAGATGAGGCAAATTGCGAAAGTTTTGGAAGGAAAAATAGAGATGGATGAGAATGAGAGTGAGAGCATGAATGCTTATTTGCTTGAAAGATTGAAGTCGCAAGGAATGTGGTGTGATTCTGGCGTTGGTTTTGGGCGTAAACATCCAACATTTGAGGATTTTCTTCAGTCTTCTTCAACCTCCCTGTCTTGGTCCGATTCCATTGTAGTGGGCAGGTGA 2037 47.52 MAALKLPILLLSFPVLFCSISALDFVFNGFNSTDVFLYGNATIESRILALTNQTSFSIGRALYPSKIPTRAPNSSRLYSFSTSFIFAMAPYRDTLPGHGLVFIFVPETGIHGTASAQNLGFLNFTLNGNPNNHVFGIEFDVFDNEEFNDPDDNHVGIDLNSLTSTATREAGFWSDDGSFNRFRLNSGENYQVWIDYSDFQMNVTMAPAGMKRPRRPLINASLNLSHVFTDEMYVGFTSSTGQLVQGHNILAWSFSNSNFSLSESLITAGLPSFVLPEDPITKSKWFIAGVTAGGFLFVFFIATSLGILIADHRRRARARAEMEDWELEYWPHRIPYQEIESATKGFAEENVIGIGGNGKVHKGVLAGGGSEVAVKRISHENDGMREFLAEISSIGRLKHRNLVSLKGWCKKETGNFLLVYDYMENGSLDKWVFDCDERNMLSCEDRIRVLKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHSHNQVASTTRIVGTMGYIAPELIRTGRASTQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLAVEGEITAAVDERLKKKGGWNEEEVERVLHLGLLCVHPDPKARPKMRQIAKVLEGKIEMDENESESMNAYLLERLKSQGMWCDSGVGFGRKHPTFEDFLQSSSTSLSWSDSIVVGR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6954194 6956230 - CmoCh13G006610.1 Cmo13g00661 394716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00661 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Cmo13g00661 678 SUPERFAMILY Protein kinase-like (PK-like) 324 616 IPR011009 -
Cmo13g00661 678 CDD lectin_legume_LecRK_Arcelin_ConA 23 252 IPR001220 GO:0030246
Cmo13g00661 678 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Cmo13g00661 678 CDD STKc_IRAK 352 617 - -
Cmo13g00661 678 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 8 670 - -
Cmo13g00661 678 PANTHER - 8 670 - -
Cmo13g00661 678 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00661 678 Gene3D Transferase(Phosphotransferase) domain 1 423 638 - -
Cmo13g00661 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 261 IPR013320 -
Cmo13g00661 678 SMART serkin_6 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00661 678 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Cmo13g00661 678 Pfam Legume lectin domain 23 258 IPR001220 GO:0030246
Cmo13g00661 678 Gene3D - 21 264 - -
Cmo13g00661 678 ProSiteProfiles Protein kinase domain profile. 346 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00661 Cmo-Chr13:6954194 Cmo14g00121 Cmo-Chr14:539127 1.94E-165 dispersed
Cmo11g01960 Cmo-Chr11:13491556 Cmo13g00661 Cmo-Chr13:6954194 0 wgd
Cmo13g00661 Cmo-Chr13:6954194 Cmo18g00348 Cmo-Chr18:2278900 0 wgd
Cmo13g00661 Cmo-Chr13:6954194 Cmo19g01029 Cmo-Chr19:9010459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74773 PF00069 Pkinase 1.30E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00661 - - csv:101222577 1142.87