Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00695 ATGAACGACTTGTTCTCGAATTCGTTCAAGCAATACACGGATCTGAAGCAACAGGCGTCTGTGGACGGCATGGAGTCTGGGAATGAGACTGTGAATTTGGACACGTTCTTCGAGGATGTCGAGAATGTTAAAGACGACATGAAACAGGTCGAGAATTTGTACAAGAAATTGCAACAGAACAATGAGGAATGCAAGATTGTCCACAATGCCAAGACGATGAAGGAGCTGAGGGGCAGAATGGAGGCCGATGTCGCCCAGGTTCTGAAACGAGTCAAAATGATTAAAGGCAAACTCGAGGCTCTGGATCGTTCCAACGCCGCTCACCGCAGCCTCCCAGGTTGCGGCCCTGGCTCCTCCGCCGACCGAACCCGAACCTCCGTCGTCAGCGGCTTGGGGAAGAAGCTCAAAGATGTCATGGATGAGTTTCAAGGCCTCAGAGGTCGAATGAACGCCGAATACAAAGAAACCATCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAAGCCGACGAAGAGACAATAGAGAATTTGATAGCAAGTGGGGAAAGCGAGAGCTTCCTCCAGAAGGCAATTCAAGAACAGGGGAGGGGTCAGATAATGGACACAATCTCAGAGATTCAGGAGCGACACGACGCTGTGAAGGAGATAGAGAAGAATTTGTTAGAGCTGCATCAAATATTCTTGGACATGGCGGCGCTGGTCGAGGCACAAGGGCACCAGCTGAACGACATCGAGAGCCATGTCGCGCATGCAAACTCGTTCGTGAGAAGAGGAACAGAGCAGCTTCAGGAAGCCAGAGAGATACAGAAGAGCTCGAGGAAGTGGACTTGCTATGCCATTATCTTGGGGGTTGTTCTTATTATCGTCATCCTCTTCCCGATCTTGACTACAATTTTACCTCATTTGTTGTAG 912 50.0 MNDLFSNSFKQYTDLKQQASVDGMESGNETVNLDTFFEDVENVKDDMKQVENLYKKLQQNNEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALDRSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDEFQGLRGRMNAEYKETIERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREIQKSSRKWTCYAIILGVVLIIVILFPILTTILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7115501 7116682 - CmoCh13G006950.1 Cmo13g00695 394750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00695 303 Pfam SNARE domain 240 291 IPR000727 -
Cmo13g00695 303 Gene3D - 193 298 - -
Cmo13g00695 303 CDD SNARE_syntaxin1-like 202 264 - -
Cmo13g00695 303 Pfam Syntaxin 36 238 IPR006011 GO:0016020
Cmo13g00695 303 CDD SynN 33 190 IPR006011 GO:0016020
Cmo13g00695 303 Gene3D - 33 160 - -
Cmo13g00695 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Cmo13g00695 303 SMART tSNARE_6 198 265 IPR000727 -
Cmo13g00695 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo13g00695 303 PANTHER SYNTAXIN 6 295 IPR045242 -
Cmo13g00695 303 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Cmo13g00695 303 Coils Coil 33 67 - -
Cmo13g00695 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cmo13g00695 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00262 Cmo-Chr3:3914507 Cmo13g00695 Cmo-Chr13:7115501 2.80E-96 dispersed
Cmo07g00850 Cmo-Chr7:4017505 Cmo13g00695 Cmo-Chr13:7115501 7.68E-114 dispersed
Cmo07g01220 Cmo-Chr7:6644227 Cmo13g00695 Cmo-Chr13:7115501 3.78E-101 dispersed
Cmo13g00695 Cmo-Chr13:7115501 Cmo14g00363 Cmo-Chr14:1665244 2.14E-109 dispersed
Cmo16g01226 Cmo-Chr16:8783964 Cmo13g00695 Cmo-Chr13:7115501 2.49E-11 dispersed
Cmo17g01031 Cmo-Chr17:8784234 Cmo13g00695 Cmo-Chr13:7115501 4.31E-06 dispersed
Cmo13g00695 Cmo-Chr13:7115501 Cmo18g00322 Cmo-Chr18:2085688 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00695 K08486 - csv:101217140 516.924