Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00698 ATGGTCAACAAACTTTCTTCTGGGAAATTGTCGAAAGCCCACAAAAGGAGCCCAAGTGGTTTAGTTTTGATCGATTTTTCTCTGAAATCGTTGTTTTGGCGGCAGTGGCGGAACGAAGGAACACTGGATACGGATTGCTGCTTAGGAGTTCTTGCAATGTCTGAAACAGAATCAATGTTAGTGGAGGAGGAAGAAAACAGGTCCAATCCGGCTGGGGAAGCCGCGGAAGCTGCCATGAACGACGAAGAGCAGCAATCATACTCGTGGCCAGTGATTCAATTCAATTCCCCTCCACAGAGGACTTACCATTTCTATAATCAGTTTCGGACTGGTCCGAACCCTAACAACTTCTTCAAGGGCGTAAAATGGTCACCTGATGGGTCGTGTTTTCTTACGAGCTCTGAGGACAATAGTCTTCGCAGATTCAACCTGCCAGATTACGGCAACGATGTTTCCGGCAATGTAGCTGGTGAAGAGGATTCTTTTACTTCCAACCTTGTTGTGGGTGAAGGGGAGTCAGTCTATGACTTCTGTTGGTATCCTTACATGTCTGCTTCAGACCCTGTTACATGCGTCTTTGCAAGTACCACACGCGACCATCCAATTCATCTCTGGGATGCTGCATCAGGCGAGGTTATCATTGTCGTGTGTGTCATCTTTGCTGGTGCTTTTGAGGTTGATGTTTCAAATTGGTCTCCTTTTTCTCCAAATGGTTTCCAATCAGTGTTAACTGGAGCTACTGTAGTATTCTTCGCATATGTAGGCTTCGATGCAGTTGCAAATTCAGCCGAAGAATCAAAAATGAGAATATTTGATTTGCATCGACCTGGTAGAGATTTTGGGCAACACTCGACGCTGCAAGGAAATAAGGAAGGTCAAACAGGCATCATATCTGCAATTGCCTTTTCTCCTACACACAATGGAATGCTTGCCTTGGGCTCTTATAGCCAGACCACCGGAATCTATAGGGAAGACAATATGGAGTTGTTATATGTTCTACATGGTCAAGAAGGTGGAATTACACATGTAGGGGAGATCCAATTTTCAAAAGATGGAAATTATCTATACACTGGAGGTCGAAAGGACCCATATATACTTTGCTGGGATATTCGCAAATCTGTAGATGTTGTATACAAGCTATACAGATCATCTGAACATACCAACCAACGGATATTTTTTGATATTGAGCCATGTGGCCAACATCTTGGCACAGGTGGTCAGGATGGTTTTGTTCATGTATATGATCTTCAAACCGGGCAGTGGGTAACAAGTTTTCAAGCAGCACAAGCTTGCATGAACATTCTCTTGCAATTTTGCAAGCGAACTGTGCAGCTGCATGCTTCTGAGGTGAAGGGGCAGCATCAAGTGGTGCTCAACCCAGCCGACTGCGACTTGGATTTCAAGATTGAAAGTGATGGTCTTCGAGGATCAGCTCTTTATGAGCAAGGTTTTGCTTACTGCTGGTCCGGTGCTCGGGCCACCGTTGGTATTACTGGTGGAAAATATTGTTTTGGTTGCAAGATTATCTCTTTACAGCCAGTTGAAATGAATGATACTGCTCCAGATCAGCAGCATCTTTGTCGTCTCGGCATTTCCATAGGGGACAGTCCAGTGGGTAATCTTGGAGAAACTAAACAAAGTTTTGGATTTGGTGGCACAGGAAAGTTCTCAAATGCTGGAAAATTTTCTGACTATGGTGAAAAGTTTGGGATTGGTGATACCATTGTTTGTGCTGTAAATCTTGAAAGCAATCCTCTGGCCTCTATTGGATTTTCCAAAAATGGCAAATGGTTGGGTACTGCAATACAATTTGATGCCGGTCCAAGAGGCCTTGGAGTAGTGGATTCTCCATTGGGGAAGCTTCGATGGGAATCAGCACTTTTTCCTCATGTATTGTTGAAGAATGTTGAGGTCCAGTTACAATTCAGTGTTGAAGAGGGGCTTGTTCCAGAAGAAGGCTTTAAACCGTGGGCCACTGCTTTGGATGATAACAATGCATTGATAGGGCCTACTTTTAATAATGTAAGAGATTGTGAAGTCATGATGATGGTGGGTCTACCGGCTTCTGGAAAAAGTACATGGGCCAAGAAATGGGCAGATCAACATCCTGAGAAACGCTATATTTTGCTTGGGACTAATCTAATTCTGGATCAAATGAAGTTACCAGGTCTATTGCGAAAACATAATTATGGACAACGCTTTGATTGTTTGATGGACCAAGCAACTGGGATTTTCAACATACTTCTGTCTAGAGCAGCTACCATACCTCGCAATTACATAATTGATCAAACAAATGTTTACAAAAATGCCCGGAAACGGAAATTGAAACCATTTGTGTACTCCCAGAAAATTGCTGTTGTGGTATTCCCAAGGCCTGAGGAGTTGCAGCGTCGATCGGCTGAAAGATTTAGAGAAATGGGGAAAGAAGTACCAGCTGATGCAGTGAATGAAATGTTAGCCAATTTTATCCTGCCCACCAGCAAGAACATGCCTGGTTCGGAAGAATTTTTTGATGAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAAGATATTTGGATGGGATGAAACGTGCTCTAACATCTGAATCACGTGACAACTTAACGTCATTTTCTAAAGCTATTACTGCTCCTCCTCATGTTTTACCTTCATCTCAAAATCAAGGTCTACGTGGTGTATCAGATGCTAGACAATATGGAAATCCAAGATTTATTTCTGAAGTACATCAAGAAAATATGTACTCTCCTTTACCTAGGTTTGTTCCCCTTCACAGACCATACGAGAGTTTGATTGGTGAAACCAGGTACCCTGGTCCAAGTAGCCATCCGCTTCACAGTTATCCAGGGAGTGATCCTTACAGCATTGGTGGACATTTCCGAGACAGTCGTCAAATGGGTGAACTCTTCCCAAGGGAATACGCTGATGTAGCTTATTCCTTCCCTACCACTGGTCCACCTTATGGAACCCCACCTCCAAGACCCGCATATCAATTTCCTTCTAATATGCCTTATGGTAGAGGTTATGCCTCCCCACGTCCAAGAGAAGATATGCCAACGTACGCTTTCTATAACAGGGTTTCCAGACTTTTCCGGGACCATCCGTCGTTTTCCAGGCTCCTTGTTCTTGTCTCCGTTAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCCAACAAATGGGGTACCCAGTCTTGCATCTAAAGCCAATGTAGATGAGAAAAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCGTCGTATGAGGTTCAAGTGATATCACCTCGAAATTATTTTGCGTTCACCCCATTATTACCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCCATTCGCAACATTGTGAGAAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAATGCTACAAGATTGATGCTAAAAACAAAAAACTCTACTGCCGATCTAACGAAAACAACAATCTGAATGGAAAAAAGGAATTTGTTGTGGATTACGACTACCTGGTGATATCTGTGGGAGCACAAGTTAATACATTCAATACTCCTGGCGTTGTGGAGAATTGCCATTTCTTAAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCCTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTATTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAGGACTTGGTCAAGTTATATCCTGGACTTCAGGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCGATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCCTCTATGCCTTATGGAATGACTGTATGGTCAACTGGAATAGGAACGCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGACGAATGGCTTCGAGTAGAGGGATGCGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTATCAAGGCAGACAAAGACAATTCTGGGACACTAACAGTTAAAGAATTTAAAGAAGTCATTGATGACATATGTGAAAGGTATCCCCAGGTGGAACTATATTTGAAGAATAAGCAAATGCACGACATTGTTGATCTTTTAAAAGGATCCAAAGGGGATGTGGCAAAGGAATCAATCGCACTAGACATTGAAGAGTTTAAATCCGCCCTTTCCCAAGTTGATTCACAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCACAACAAGGCGCATATCTTGCCCATTGTTTTAACCGTATGGAAGAATGCGAAAGCAATCCTGAAGGTCCTCTGAGGTTTAGGGGATCAGGACGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCATTAGGAGGAGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTATTCTGTCTATGCAAGGTGA 4722 43.05 MVNKLSSGKLSKAHKRSPSGLVLIDFSLKSLFWRQWRNEGTLDTDCCLGVLAMSETESMLVEEEENRSNPAGEAAEAAMNDEEQQSYSWPVIQFNSPPQRTYHFYNQFRTGPNPNNFFKGVKWSPDGSCFLTSSEDNSLRRFNLPDYGNDVSGNVAGEEDSFTSNLVVGEGESVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGEVIIVVCVIFAGAFEVDVSNWSPFSPNGFQSVLTGATVVFFAYVGFDAVANSAEESKMRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHNGMLALGSYSQTTGIYREDNMELLYVLHGQEGGITHVGEIQFSKDGNYLYTGGRKDPYILCWDIRKSVDVVYKLYRSSEHTNQRIFFDIEPCGQHLGTGGQDGFVHVYDLQTGQWVTSFQAAQACMNILLQFCKRTVQLHASEVKGQHQVVLNPADCDLDFKIESDGLRGSALYEQGFAYCWSGARATVGITGGKYCFGCKIISLQPVEMNDTAPDQQHLCRLGISIGDSPVGNLGETKQSFGFGGTGKFSNAGKFSDYGEKFGIGDTIVCAVNLESNPLASIGFSKNGKWLGTAIQFDAGPRGLGVVDSPLGKLRWESALFPHVLLKNVEVQLQFSVEEGLVPEEGFKPWATALDDNNALIGPTFNNVRDCEVMMMVGLPASGKSTWAKKWADQHPEKRYILLGTNLILDQMKLPGLLRKHNYGQRFDCLMDQATGIFNILLSRAATIPRNYIIDQTNVYKNARKRKLKPFVYSQKIAVVVFPRPEELQRRSAERFREMGKEVPADAVNEMLANFILPTSKNMPGSEEFFDEVIFVELDRAESQRYLDGMKRALTSESRDNLTSFSKAITAPPHVLPSSQNQGLRGVSDARQYGNPRFISEVHQENMYSPLPRFVPLHRPYESLIGETRYPGPSSHPLHSYPGSDPYSIGGHFRDSRQMGELFPREYADVAYSFPTTGPPYGTPPPRPAYQFPSNMPYGRGYASPRPREDMPTYAFYNRVSRLFRDHPSFSRLLVLVSVSGGSLVAYADASPTNGVPSLASKANVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAKNKKLYCRSNENNNLNGKKEFVVDYDYLVISVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITAFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFIKADKDNSGTLTVKEFKEVIDDICERYPQVELYLKNKQMHDIVDLLKGSKGDVAKESIALDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECESNPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYAR 1573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7122507 7138274 + CmoCh13G006980.1 Cmo13g00698 394753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00698 1573 SUPERFAMILY EF-hand 1392 1487 IPR011992 -
Cmo13g00698 1573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 849 IPR027417 -
Cmo13g00698 1573 Pfam AAA domain 680 822 - -
Cmo13g00698 1573 Gene3D Amino acid/polyamine transporter I 210 277 - -
Cmo13g00698 1573 Gene3D - 674 854 IPR027417 -
Cmo13g00698 1573 ProSitePatterns EF-hand calcium-binding domain. 1412 1424 IPR018247 -
Cmo13g00698 1573 Gene3D - 103 209 IPR015943 GO:0005515
Cmo13g00698 1573 Pfam WD domain, G-beta repeat 329 369 IPR001680 GO:0005515
Cmo13g00698 1573 PANTHER NADH DEHYDROGENASE 1021 1572 IPR045024 GO:0003954|GO:0006116
Cmo13g00698 1573 SUPERFAMILY Concanavalin A-like lectins/glucanases 442 603 IPR013320 -
Cmo13g00698 1573 SUPERFAMILY FAD/NAD(P)-binding domain 1076 1295 IPR036188 -
Cmo13g00698 1573 Gene3D - 1445 1573 - -
Cmo13g00698 1573 Gene3D - 1068 1414 - -
Cmo13g00698 1573 SUPERFAMILY FAD/NAD(P)-binding domain 1234 1396 IPR036188 -
Cmo13g00698 1573 Pfam SPRY domain 528 603 IPR003877 GO:0005515
Cmo13g00698 1573 Gene3D - 452 668 IPR043136 -
Cmo13g00698 1573 PRINTS FAD-dependent pyridine nucleotide reductase signature 1243 1261 - -
Cmo13g00698 1573 PRINTS FAD-dependent pyridine nucleotide reductase signature 1182 1200 - -
Cmo13g00698 1573 PRINTS FAD-dependent pyridine nucleotide reductase signature 1079 1098 - -
Cmo13g00698 1573 PANTHER NAD(P)H DEHYDROGENASE B2 1021 1572 - -
Cmo13g00698 1573 SMART WD40_4 279 323 IPR001680 GO:0005515
Cmo13g00698 1573 SMART WD40_4 373 415 IPR001680 GO:0005515
Cmo13g00698 1573 SMART WD40_4 159 206 IPR001680 GO:0005515
Cmo13g00698 1573 SMART WD40_4 326 369 IPR001680 GO:0005515
Cmo13g00698 1573 SMART WD40_4 104 143 IPR001680 GO:0005515
Cmo13g00698 1573 SMART SPRY_3 499 646 IPR003877 GO:0005515
Cmo13g00698 1573 ProSiteProfiles EF-hand calcium-binding domain profile. 1399 1434 IPR002048 GO:0005509
Cmo13g00698 1573 Pfam Pyridine nucleotide-disulphide oxidoreductase 1077 1402 IPR023753 GO:0016491
Cmo13g00698 1573 SUPERFAMILY WD40 repeat-like 109 427 IPR036322 GO:0005515
Cmo13g00698 1573 CDD SPRY_hnRNP 456 646 IPR035778 -
Cmo13g00698 1573 Gene3D - 278 436 IPR015943 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00128 Cmo-Chr2:654874 Cmo13g00698 Cmo-Chr13:7122507 0 dispersed
Cmo13g00698 Cmo-Chr13:7122507 Cmo20g00366 Cmo-Chr20:1807087 1.46E-54 dispersed
Cmo13g00698 Cmo-Chr13:7122507 Cmo16g00861 Cmo-Chr16:4583811 6.67E-08 wgd
Cmo13g00698 Cmo-Chr13:7122507 Cmo19g00997 Cmo-Chr19:8878606 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00698 K03885 - csv:101204145 1064.68