Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00707 ATGAAACCCGAGAAGCTTTTGAGCTTTTCAACTCATCTTCTTCTTCTTCTTTCATTTTCATATTTCTGTACAAGATTCAGCTCGGGGAGCAGAGATACAATCACATCAACAACCTCCATTAAAGACCCTGCAACCATAGTTTCAAATGCCAGTTCCTTCCAGCTAGGGTTCTTCTCACCGGCTAATTCCACGAATCGCCATGTCGGAATCTGGTTCAACAACCAAATTTCTCCACAAACTGTAGTGTGGGTAGCCAACAGAGATAACCCTCTCAAAGATTCTTCCGGGATCTTCACAATTTCCGAGGATGGGAATCTTGTCGTGTTGGATGGAAACCGCAACCTCCTCTGGTCTACCAATGTTTCTTCCTCCGCAACCAACGTCAGCGCCCGAATTTTAGATTCCGGCAACCTTGTTTTGGAAGATTCCGCTTCCAAGATGGTTATCTGGCAGAGTTTCAAAAACCCATGTGATGTATTCTTAGCTTCCATGAAATTTATGACGAACACAAGAACTAACGAAAAAATACAACTTACCTCATGGAACAACCCTTCCGATCCATCCATGGGAAGCTTCTCCTTGGGGCTCCATGTTCTTCACAATATTCCTGAAGGTGTAGTTTGGAATGGGCAGAAGACGTATTGGCGATCTGGTCCATGGAATGGTCAAATCTTCATTGGCATACCCAACATGGATTCAACTTATCTCTCTGGATATACCCTTGACATAGATGATCAAACTTACTATCTTTCCGCCACTTTTAATGAGGATGAAAATTTCGGCTACTTGTCTTTAAGCCCACAAGGGAATGTTCAAGAAACGTATATGGATTTTCAGGAGAAGCGCTGGAGGGCTGGTTGGTCCGCTCTACAAACGCCGTGTGATTTCTATGGCGCTTGTGGGGCGTTTGGGATCTGCAATCCAAGTGCTTCCCCTGTTTGCAGGTGTTTAACAGGGTTTAACCCAAAGCATGAAGAGGAGTGGAATCGAGGAAATTGGAGTAATGGGTGTGTGAGAAACACGCCATTAAAATGCGACATGTCCAACAAAACCAGTATTGAGGAAGATGGATTTCACGTGGAGAGCTTGGTTAAAGTTCCATTTTTGGCAGAGTGGGTTGATTCCTTTTCTTCAATACAGGATTGCAGAGTCAAATGCTTGGAGAATTGTTCGTGTAGTGCTTATGCTTATGTAAATGGTATTCGTTGTATGCTCTGGAAAGGGGATTTGATTGATATACAAAAGTTTGAGAGCGGTGGAACGGATCTGTACCTTCGACTGCCATATGGAGACTTGGATCATACAAAAGATGTCAAAGGCCAAAGAGGTATCATTATAGGCATAGTGATATCAGTAACGTTTATCATCTTCATCATTGTAACATATATATGGTGCAGATGGAAGAGTCGCAAACGAGAGAAGAACAGATCAAGTACGGGTTCAAAGGAAAAGATTTGGAAGTTGAGAAGGGACGATACGATTGAGGATGACGTTAAATTGGAGGAGCTGCCTGTTTATGACTTTGAGACGTTGGTATCTGCAACAAATAACTTCGCCCCAAGCAACAAGTTAGGACAGGGAGGCTTTGGTCCAGTGTATAAAGGACAACTGCTAAATGGAGAGGAAATAGCAGTAAAGAGGCTTTCAAGAGTGTCTAATCAAGGGTATGAAGAGTTCTTAAATGAAGTGAGAGTCATCTCAAAGCTACAACATAGGAATCTTGTGCAGCTTCTTGGTTGTTGCATCGAAGGAGAAGAGAAGATATTAATATATGAATATATGCCCAACCTAAGTTTGGATGCACTCATCTTTGGCTCGGCCGAGCAAAAACTAATATTGGATTGGCGGAAGAGATACAACATTATCGATGGAATTGCTCGAGGCCTCCTTTACCTTCATCGAGATTCAAGATTGAGAATCATTCATAGAGATTTAAAGGCAAGTAATATTCTATTAGATAAAGATTTGAATCCTAAAATATCTGATTTTGGCATGGCGAGGATTTTTGGTGGTAATGAAGTTCAAGCAAACACTTTAAGAGTCGTTGGAACTTACGGGTACATGTCTCCTGAATATGCAATGGGAGGTCAATTTTCAGAGAAATCAGATGTGTTCAGTTTTGGAGTTCTATTACTTGAAATCATAAGTGGGAGACGAAATACAGGATTCTACCTCGAAAATCATACCTTAAATTTATTGGAATTTGTCTGGAAGCTACGGAGGGAAAACAATCTTATTTCTTTGATTGAGCCAACAATCTACAAAGTCTGCTATCAATCAGAGATTTTGAAATGCATTCATGTAGGGTTGCTATGTGTTCAAGAATTCATAAACGATCGGCCAAATGTCTCTACCATTATCTCAATGATCAACAGTGACATTGTAGATCTTCCTTCTCCAAAGCAACCTGGCTTTGTTAGTCGACCACAAGACAATAACACGACATCTTCATCTCAACAAAATTTAGACCATTTTTCTATAAATAATCTTACTCATACCACAATCATACCCCGATAA 2517 40.92 MKPEKLLSFSTHLLLLLSFSYFCTRFSSGSRDTITSTTSIKDPATIVSNASSFQLGFFSPANSTNRHVGIWFNNQISPQTVVWVANRDNPLKDSSGIFTISEDGNLVVLDGNRNLLWSTNVSSSATNVSARILDSGNLVLEDSASKMVIWQSFKNPCDVFLASMKFMTNTRTNEKIQLTSWNNPSDPSMGSFSLGLHVLHNIPEGVVWNGQKTYWRSGPWNGQIFIGIPNMDSTYLSGYTLDIDDQTYYLSATFNEDENFGYLSLSPQGNVQETYMDFQEKRWRAGWSALQTPCDFYGACGAFGICNPSASPVCRCLTGFNPKHEEEWNRGNWSNGCVRNTPLKCDMSNKTSIEEDGFHVESLVKVPFLAEWVDSFSSIQDCRVKCLENCSCSAYAYVNGIRCMLWKGDLIDIQKFESGGTDLYLRLPYGDLDHTKDVKGQRGIIIGIVISVTFIIFIIVTYIWCRWKSRKREKNRSSTGSKEKIWKLRRDDTIEDDVKLEELPVYDFETLVSATNNFAPSNKLGQGGFGPVYKGQLLNGEEIAVKRLSRVSNQGYEEFLNEVRVISKLQHRNLVQLLGCCIEGEEKILIYEYMPNLSLDALIFGSAEQKLILDWRKRYNIIDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDLNPKISDFGMARIFGGNEVQANTLRVVGTYGYMSPEYAMGGQFSEKSDVFSFGVLLLEIISGRRNTGFYLENHTLNLLEFVWKLRRENNLISLIEPTIYKVCYQSEILKCIHVGLLCVQEFINDRPNVSTIISMINSDIVDLPSPKQPGFVSRPQDNNTTSSSQQNLDHFSINNLTHTTIIPR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7177217 7180439 - CmoCh13G007070.1 Cmo13g00707 394762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00707 838 CDD STKc_IRAK 524 791 - -
Cmo13g00707 838 SMART ntp_6 353 427 IPR003609 -
Cmo13g00707 838 ProSiteProfiles PAN/Apple domain profile. 345 428 IPR003609 -
Cmo13g00707 838 PANTHER - 14 819 - -
Cmo13g00707 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 221 IPR036426 -
Cmo13g00707 838 CDD PAN_AP_plant 341 428 - -
Cmo13g00707 838 Pfam PAN-like domain 354 413 IPR003609 -
Cmo13g00707 838 Gene3D - 25 153 IPR036426 -
Cmo13g00707 838 Pfam Protein tyrosine and serine/threonine kinase 522 734 IPR001245 GO:0004672|GO:0006468
Cmo13g00707 838 SMART blect_4 37 156 IPR001480 -
Cmo13g00707 838 PIRSF SRK 4 838 IPR024171 GO:0004674
Cmo13g00707 838 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 14 819 - -
Cmo13g00707 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cmo13g00707 838 Pfam S-locus glycoprotein domain 215 323 IPR000858 GO:0048544
Cmo13g00707 838 ProSiteProfiles Bulb-type lectin domain profile. 31 153 IPR001480 -
Cmo13g00707 838 SMART serkin_6 518 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00707 838 Pfam Domain of unknown function (DUF3403) 792 838 IPR021820 GO:0004674
Cmo13g00707 838 Pfam D-mannose binding lectin 80 181 IPR001480 -
Cmo13g00707 838 Gene3D Phosphorylase Kinase; domain 1 479 593 - -
Cmo13g00707 838 ProSiteProfiles Protein kinase domain profile. 518 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00707 838 SUPERFAMILY Protein kinase-like (PK-like) 503 820 IPR011009 -
Cmo13g00707 838 Gene3D Transferase(Phosphotransferase) domain 1 594 796 - -
Cmo13g00707 838 CDD B_lectin 39 156 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00707 Cmo-Chr13:7177217 Cmo13g00710 Cmo-Chr13:7186611 0 dispersed
Cmo13g00712 Cmo-Chr13:7194668 Cmo13g00707 Cmo-Chr13:7177217 6.27E-13 dispersed
Cmo13g00707 Cmo-Chr13:7177217 Cmo13g00708 Cmo-Chr13:7182329 0 tandem
Cmo13g00707 Cmo-Chr13:7177217 Cmo16g00870 Cmo-Chr16:4644745 0 wgd
Cmo13g00707 Cmo-Chr13:7177217 Cmo19g00983 Cmo-Chr19:8830134 9.06E-151 wgd
Cmo13g00707 Cmo-Chr13:7177217 Cmo03g00525 Cmo-Chr3:5400189 0 wgd
Cmo13g00707 Cmo-Chr13:7177217 Cmo07g00278 Cmo-Chr7:1365082 0 wgd
Cmo13g00707 Cmo-Chr13:7177217 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74774 PF07714 PK_Tyr_Ser-Thr 8.60E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00707 - - cpep:111783520 1619.75