Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00708 ATGAAATGGAGACAAGAAATTTGCAGCTTTACATGTTATCGATCTGTTCTTCTTCTTCTGCTGCTGCTGCTGCTTTCATTCACATCCTTCTGTTCAAGATTTTGCTTTGCCGGCGATACCATCACTCCAGCAAATTTCATCAAAGACCCAGCAACCATTATATCTAATGGCGGTGTTTTCTCGTTGGGGTTCTTCTCGCCTCTTAATTCTACACGCCGATATGTCGGAATTTGGTTCCACAAAATTTCTTCACAAGCTGTAGTATGGGTGGCCAACAGAGACAACCCTATCAAAGATACTTCTGGGATTTTCACTATTTCCAATGATGGGAATCTTGTCGTCTTGGATTCAAACAACAACATTCTTTGGTCGTCGAATGTTTCTTCCTCTGTAATTGGAACCGACAATACCAGTGCTCAGATTTTAGATTCCGGAAACCTGGTTCTGAAAGATTCTACGTCTGGGGTGATTATATGGGAGAGTTTCAAACACCCTTGTGATAAATTCTTGACTTCCATGAAGATTAAGACGAACACAAGAACTAAAGAGGTGATCGGCTATACCTCATGGAACACCCCTTCCGATCCAGCTACTGGAAAGTTTTTATTTCAGCTGGATGTTCATAATATCCCTGAAGCTGTCATTTTGAATGGTCGGGACACATTTTGGCGCTCCGGTCCATGGAGCGGTCAGTCCTTTATTGGAATACCTGAAATGAACTCTGTTTACCTCTCTGGATATAACCTCGCAATCGAAGACCAAACTTACACTCTCTCTCTTGCTTCTAAATATGTCGCTCGAGAATTTTCTTATTTGTTCTTGAACTCACAAGGGATTGTTCAGCAAATGGATTGGGATGCTGAGAAGCAGCACTGGAGTGCTAGTTGGTCAGCTCAGAAAACAGAGTGCGATTTGTATGGCGCTTGTGGGGCGTTTGGGATCTGTAATGCGAAAACATCCCCTGTTTGCAGCTGCTTAAGAGGGTTTGAGCCAAAGCACGAAGAGGAATGGAATCAAGGAAATTGGAGTAATGGGTGTGTGAGAAAGACGCCATTAAAATGCGAGAACAGGTCTAGTACAGAGGAAGATGGGTTTTCTAAACTGGAAATGGTTAAAGTTCCATTTTTGGCAGAGTGGTCTAATTCCTCTGCTTCAGTAGACGATTGCAGGCGCGACTGCTTGGAAAATTGTCGGTGTTCTTCTTATGCATTTGAGAATGAAATATGCATGCACTGGAGGAATGCCTTAATTGATATACAAAAGTTCGAGAGAGGTGGAGCAGATCTGTACCTTCGAATGGCATTCGCAGATTTAGATTCAAATAATGTAAGAGACAAGAAACGAATTACTATAGCCGTAGTTGTACCAGCAACGCTTGTCACCTTCATCGTTGCCATAGCCTTTTGCTGGAAATGGAAGACTAAAAAACAGAAGAAGAGGATAATGCTGACGTATGGTGAAAGAGAAAAGAATTTGAAGCAAACACGGGAGAGTGATACTATGATTGAGGATGATATCAAACTTGAGGAGCTGCCACTTTATGACTTTGAGAAGCTAGCAATTGCAACCAATGAGTTTGATATGAGCAACAAGCTTGGGCAGGGTGGGTTTGGGCCCGTATATAAGGGGAGGTTATTGAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCCTCTAAACAAGGGTACGAAGAGTTTATAAACGAAGTGAGAGTGATTTCAAAGCTGCAACACAGGAATCTTGTACGCCTTTTGGGATGTTGCATTGAAGGAGAAGAGAAGATGTTAATATATGAGTATATGCCCAACCTAAGTTTGGATGCCTTCATCTTTGGCTCCCGTGTAAAAAAATTCCTCGATTGGAATAAAAGATTTAAAATTATCGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGGGATTCGAGATTGAAAATCATTCATAGAGATCTCAAAGTAAGTAACATTTTGTTAGACAAAGATTTGAACCCTAAAATTTCAGATTTTGGCATGGCAAGAATTTTTTACAGCAACGAGGTTCAAGCAAACACTTTACGAGTTGTTGGAACTTATGGATATATGTCTCCTGAGTATGCAATGCAAGGTCAATTTTCAGAAAAATCAGATGTATTTAGTTTCGGAGTTTTATTGCTCGAAATTATTAGTGGAAAAAGAAATACAGAGTTCTATGGCCATCAACATGCCATAAGCTTACTGGGATTTGTATGGAAGCTATGGATGGAAGACAATCTTATTCCTTTGATTGAACCGACAATATATGAACCATGTTACCAATTAGAGATTTTGAGATGTATTCAAGTGGGGCTCTTATGCGTTCAAGAATTTGTAAATGATAGGCCAAATGTTTCCACTATCATTTCCATGCTTAACAGTGAAATCGTTGATCTTCCTTCTCCAAATCAACCCGGCTTTGTTGGCAGACCATATGAAAGTAGCACAGAATCTTCTCAACCAAACTTAGATAGATATTCAGCCAATAATGTTACAGTTACTACAGTTGCAGCTCGATAA 2535 40.36 MKWRQEICSFTCYRSVLLLLLLLLLSFTSFCSRFCFAGDTITPANFIKDPATIISNGGVFSLGFFSPLNSTRRYVGIWFHKISSQAVVWVANRDNPIKDTSGIFTISNDGNLVVLDSNNNILWSSNVSSSVIGTDNTSAQILDSGNLVLKDSTSGVIIWESFKHPCDKFLTSMKIKTNTRTKEVIGYTSWNTPSDPATGKFLFQLDVHNIPEAVILNGRDTFWRSGPWSGQSFIGIPEMNSVYLSGYNLAIEDQTYTLSLASKYVAREFSYLFLNSQGIVQQMDWDAEKQHWSASWSAQKTECDLYGACGAFGICNAKTSPVCSCLRGFEPKHEEEWNQGNWSNGCVRKTPLKCENRSSTEEDGFSKLEMVKVPFLAEWSNSSASVDDCRRDCLENCRCSSYAFENEICMHWRNALIDIQKFERGGADLYLRMAFADLDSNNVRDKKRITIAVVVPATLVTFIVAIAFCWKWKTKKQKKRIMLTYGEREKNLKQTRESDTMIEDDIKLEELPLYDFEKLAIATNEFDMSNKLGQGGFGPVYKGRLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFGSRVKKFLDWNKRFKIIDGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFYSNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKRNTEFYGHQHAISLLGFVWKLWMEDNLIPLIEPTIYEPCYQLEILRCIQVGLLCVQEFVNDRPNVSTIISMLNSEIVDLPSPNQPGFVGRPYESSTESSQPNLDRYSANNVTVTTVAAR 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7182329 7185406 - CmoCh13G007080.1 Cmo13g00708 394763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00708 844 CDD B_lectin 45 165 IPR001480 -
Cmo13g00708 844 Gene3D Phosphorylase Kinase; domain 1 486 601 - -
Cmo13g00708 844 Pfam PAN-like domain 359 419 IPR003609 -
Cmo13g00708 844 CDD STKc_IRAK 532 798 - -
Cmo13g00708 844 Gene3D - 34 163 IPR036426 -
Cmo13g00708 844 Pfam D-mannose binding lectin 87 190 IPR001480 -
Cmo13g00708 844 ProSiteProfiles Protein kinase domain profile. 526 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00708 844 SMART ntp_6 360 433 IPR003609 -
Cmo13g00708 844 SMART serkin_6 526 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00708 844 PIRSF SRK 10 844 IPR024171 GO:0004674
Cmo13g00708 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 196 IPR036426 -
Cmo13g00708 844 SUPERFAMILY Protein kinase-like (PK-like) 509 797 IPR011009 -
Cmo13g00708 844 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 22 825 - -
Cmo13g00708 844 SMART blect_4 44 165 IPR001480 -
Cmo13g00708 844 PANTHER - 22 825 - -
Cmo13g00708 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Cmo13g00708 844 ProSiteProfiles PAN/Apple domain profile. 354 434 IPR003609 -
Cmo13g00708 844 Pfam Protein tyrosine and serine/threonine kinase 528 739 IPR001245 GO:0004672|GO:0006468
Cmo13g00708 844 ProSiteProfiles Bulb-type lectin domain profile. 38 162 IPR001480 -
Cmo13g00708 844 Pfam Domain of unknown function (DUF3403) 799 844 IPR021820 GO:0004674
Cmo13g00708 844 Gene3D Transferase(Phosphotransferase) domain 1 602 804 - -
Cmo13g00708 844 Pfam S-locus glycoprotein domain 223 332 IPR000858 GO:0048544
Cmo13g00708 844 CDD PAN_AP_plant 350 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00708 Cmo-Chr13:7182329 Cmo13g00710 Cmo-Chr13:7186611 0 dispersed
Cmo13g00713 Cmo-Chr13:7195557 Cmo13g00708 Cmo-Chr13:7182329 3.59E-168 dispersed
Cmo13g00707 Cmo-Chr13:7177217 Cmo13g00708 Cmo-Chr13:7182329 0 tandem
Cmo01g01225 Cmo-Chr1:9840485 Cmo13g00708 Cmo-Chr13:7182329 5.01E-175 wgd
Cmo13g00708 Cmo-Chr13:7182329 Cmo16g00871 Cmo-Chr16:4667379 8.67E-174 wgd
Cmo13g00708 Cmo-Chr13:7182329 Cmo19g00979 Cmo-Chr19:8813769 1.53E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74775 PF07714 PK_Tyr_Ser-Thr 1.60E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00708 - - cmos:111434313 1672.91