Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00710 ATGAAATTCAGACATCAAATTTGCAGCTTTACGTGCTGTCGATCTCTTCTTCTGCTGCTGCTGCTTTCATTGACATCCTTCTGTTCAAGATTTGGCTTTGCCGGCGATACGATCACATCAGCAAATTTCATCGAAGACCCAGCAACCATTTTATCTAATGGAAGTGTTTTCGAGTTGGGGTTCTTCTCGCCTGTTAATTCAACCCGCCGATATGTCGGAATTTGGTTCCAGGAATTTTCCCCACAAACCATAGTATGGGTGGCCAACAGAGACAACCCTGTTAAAGATACTTCTGGGATTTTCACCATTTCCAAGGATGGGAATCTTGTCGTCTTGGATTCAAACGACAGCATCCTTTGGTCTTCAAATGTTTCTTCCTCTGTAATTGGAACCGACAACACAAGTGCTCAGATTTTAGATTCCGGAAACCTGGTTTTGAAAGATTCTACGTCTGGGGTGATTATATGGGAGAGTTTCAAACACCCTTGTGATAAATTCTGGACTCCCATGAAGATTAAGACAAACACAAGGACTAAAGAGGTGGTCGGATTTACCTCATGGAACACTCCTTCCGATCCATCTACAGGTAAGTTTTCATTTCTGCTGGATGTTCATGATCTTCCTGAAGCTGTCATTTTAAATGGGGGTGATACTTATTGGCGTTCTGGTCCATGGAATGGTCAGTCTTTTATTGGAGTACCTGAAATGAACTCTGTTTATCTCTCTGGATATAACCTCGCAATCGAAGACCAAACGTACACTCTCTCTCTTGCTTCCAAATATGCCTTTCGAGAATTTTCTTATTTGTTCTTGAACTCACAAGGGAATGTTGAGCAAATGAATTGGGATTCTGAGAAGCAGTACTGGAACTTTAGTTGGTTGGCTCTAAAAACAGAGTGCGATTTCTACGGCGCTTGTGGGGCGTTTGGGATCTGCAATGCAAAAACATCCCCTGTTTGCAGCTGTTTAAGAGGGTTTGAGCCAAAGCACGAAGAGGAATGGAATCGAGGAAATTGGAGTAATGGGTGTGTGAGAAAGACGCCATTAAAATGCGAGAACAGGTCTAGTACAGAGGAAGATGGGTTTTTTAAACTGGAAATGGTTAAAGTTCCATTTTTGGCAGAGTGGTCTAATTCCTCTGCTTCCGTAGACGATTGCAGGCGCGACTGCTTGGAAAATTGTTGGTGTTCTTCTTATGCATTTGAAAATGAAATATGCATGCACTGGAGAAATGACTTAATTGATATGCAAAAGTTCGAGAGCGGTGGAGTAGATCTTCACCTTCGAATGGCATTAGCAGATCTAGATACAAATAATGTAAGAGACAAGAAACGAGTTATTATTGCCGTAGTTGTACCAGCGACGCTTGTGATCTTCATCATTGCTATAGCCTTTTACTGGAAATGGAAGACTAAAAAACAGAAGAAGAAGATAATGATGACGTCTGGTGAAAAAGAAAAGATGAAGCAAACGCGGGAGAATGATACTATGATTGAGGATGATATCAAACTTGAGGAGCTGCCACTTTATGATTTTGAGAAGGTAGCAATTGCAACCAATTACTTTGATATGAGCAACAAGCTTGGGCAGGGTGGCTTCGGGCCAGTATATAAGGGGAGGTTATTGAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCCTCTAAACAAGGGTATGAAGAGTTTATAAACGAAGTGAGAGTGATTTCAAAGCTGCAACACAGGAATCTTGTACGCCTTTTGGGATGTTGCATTGAAGGAGAAGAGAAGATGTTGATCTATGAGTACATGCCCAACTTAAGTTTGGATGCATTCATCTTTGATACTCTCCACTCACTCTTGACAGTTAGGTTTAGAGTATTCCTTATCTCACCAAAACTAGAATCTACCTGTGTAGGCTCTCCCGAACAACAAATTCTCGATTGGAGAAAAAGATTCGATATTGTCGATGGAATTGCTCGTGGTCTTCTTTATCTTCACAGGGATTCGAGATTGAAAATCATTCACAGAGATCTCAAAGCAAGTAATATTTTGTTAGATAAAGATCTGAACCCTAAAATTTCAGACTTTGGCATGGCAAGAATCTTTTACGGCAATGAAGATCAAGCAAACACTTTAAGAGTTGTCGGAACTTATGGATATATGTCTCCTGAGTATGCAATGCAAGGTCAATTTTCAGAAAAATCAGACGTTTTTAGTTTTGGAGTTTTACTACTTGAAATTATTAGCGGGAGACGAAATACAGGGTTCTACCTCCATGAATATGGCATAAGCTTATTGGGATTTGTATGGAAGTTGTGGACTGAAGGCAATCTTATTCCTTTGATTGAACCAGCAATATATGAACTATGCTACCAATTAGAGATTTTGAGATGCATTCAAGTGGGGCTCTTATGCGTTCAAGAATTTGTAAATGATAGGCCAAATGTGTCCACCATTATTTCAATGCTCAACAGTGAAATTGTCGATCTTCCTTCTCCAAAGCAACCGGGTTTTGTCGGTAGACCACATGAAAGTAACACACAACCTTCTCAACCAAATTCAGATAAATATTCAGCAAATAATGTTACACTTACCACAATTATAGCTCGATAA 2598 40.18 MKFRHQICSFTCCRSLLLLLLLSLTSFCSRFGFAGDTITSANFIEDPATILSNGSVFELGFFSPVNSTRRYVGIWFQEFSPQTIVWVANRDNPVKDTSGIFTISKDGNLVVLDSNDSILWSSNVSSSVIGTDNTSAQILDSGNLVLKDSTSGVIIWESFKHPCDKFWTPMKIKTNTRTKEVVGFTSWNTPSDPSTGKFSFLLDVHDLPEAVILNGGDTYWRSGPWNGQSFIGVPEMNSVYLSGYNLAIEDQTYTLSLASKYAFREFSYLFLNSQGNVEQMNWDSEKQYWNFSWLALKTECDFYGACGAFGICNAKTSPVCSCLRGFEPKHEEEWNRGNWSNGCVRKTPLKCENRSSTEEDGFFKLEMVKVPFLAEWSNSSASVDDCRRDCLENCWCSSYAFENEICMHWRNDLIDMQKFESGGVDLHLRMALADLDTNNVRDKKRVIIAVVVPATLVIFIIAIAFYWKWKTKKQKKKIMMTSGEKEKMKQTRENDTMIEDDIKLEELPLYDFEKVAIATNYFDMSNKLGQGGFGPVYKGRLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFDTLHSLLTVRFRVFLISPKLESTCVGSPEQQILDWRKRFDIVDGIARGLLYLHRDSRLKIIHRDLKASNILLDKDLNPKISDFGMARIFYGNEDQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYLHEYGISLLGFVWKLWTEGNLIPLIEPAIYELCYQLEILRCIQVGLLCVQEFVNDRPNVSTIISMLNSEIVDLPSPKQPGFVGRPHESNTQPSQPNSDKYSANNVTLTTIIAR 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7186611 7189627 - CmoCh13G007100.1 Cmo13g00710 394765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00710 865 Gene3D Phosphorylase Kinase; domain 1 479 597 - -
Cmo13g00710 865 Pfam S-locus glycoprotein domain 220 329 IPR000858 GO:0048544
Cmo13g00710 865 Pfam PAN-like domain 356 416 IPR003609 -
Cmo13g00710 865 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 19 613 - -
Cmo13g00710 865 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 636 846 - -
Cmo13g00710 865 ProSiteProfiles Protein kinase domain profile. 522 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00710 865 SMART serkin_6 522 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00710 865 SUPERFAMILY Protein kinase-like (PK-like) 505 818 IPR011009 -
Cmo13g00710 865 ProSiteProfiles Bulb-type lectin domain profile. 35 159 IPR001480 -
Cmo13g00710 865 PIRSF SRK 7 865 IPR024171 GO:0004674
Cmo13g00710 865 CDD PAN_AP_plant 347 431 - -
Cmo13g00710 865 MobiDBLite consensus disorder prediction 833 865 - -
Cmo13g00710 865 SMART ntp_6 357 430 IPR003609 -
Cmo13g00710 865 CDD B_lectin 42 162 IPR001480 -
Cmo13g00710 865 MobiDBLite consensus disorder prediction 836 865 - -
Cmo13g00710 865 ProSiteProfiles PAN/Apple domain profile. 351 431 IPR003609 -
Cmo13g00710 865 Gene3D - 31 160 IPR036426 -
Cmo13g00710 865 CDD STKc_IRAK 528 819 - -
Cmo13g00710 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Cmo13g00710 865 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 227 IPR036426 -
Cmo13g00710 865 Gene3D Transferase(Phosphotransferase) domain 1 628 825 - -
Cmo13g00710 865 Pfam Protein tyrosine and serine/threonine kinase 524 746 IPR001245 GO:0004672|GO:0006468
Cmo13g00710 865 SMART blect_4 41 162 IPR001480 -
Cmo13g00710 865 Pfam D-mannose binding lectin 83 187 IPR001480 -
Cmo13g00710 865 PANTHER - 636 846 - -
Cmo13g00710 865 Pfam Domain of unknown function (DUF3403) 820 865 IPR021820 GO:0004674
Cmo13g00710 865 PANTHER - 19 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00707 Cmo-Chr13:7177217 Cmo13g00710 Cmo-Chr13:7186611 0 dispersed
Cmo13g00708 Cmo-Chr13:7182329 Cmo13g00710 Cmo-Chr13:7186611 0 dispersed
Cmo13g00710 Cmo-Chr13:7186611 Cmo09g00901 Cmo-Chr9:4698818 0 dispersed
Cmo13g00710 Cmo-Chr13:7186611 Cmo13g00711 Cmo-Chr13:7190230 0 tandem
Cmo13g00710 Cmo-Chr13:7186611 Cmo18g00315 Cmo-Chr18:2022876 6.89E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74776 PF07714 PK_Tyr_Ser-Thr 2.70E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00710 - - cpep:111783520 1441.79