Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00711 ATGAACCCCAACAACATCTGCGCCTTCTCATTTCTTCTTCTTCTTTCATCTATATGCTTCGGCAAAGATTCAATCACATCTGAAAGTTTCATCAAAGACCCAGCAACCATAACCTCAAATGGCAGCTCCTTCCAGTTGGGGTTCTTCACACCACTTAATTCCACCGCCCGATATGTCGGGATTTGGTACAACCAAATCCCCTTGCAAACCATTGTGTGGGTAGCAAATGCAAACAACCCTCTCCACGATTCTTCTGGGATTTTCACGATTTCCAAGGATGGAAACCTTGTCGTCTCAAATGGAAACCACACCGTCCTCTGGTCTTCAAATGTTACTTCTCCAACAGCCAACACAACCGCTCGAATCCTCGATTCGGGCAACCTTGTTTTGGAAGATCCTGCTTCTGGGTTGGTTATATGGGAGAGCTTCAAACATCCTTCCAATTCATTCTTGCCTCCCATGAAACTCATCTCAAGCAAAAGAACCACCGAGAAGGTCGAGTTTACCTCATGGAAAACCGCTTCCGATCCATCTACAGGTAACTTTTCTTTAGCCTTAGATGTTCGGAGTATCCCTGAAGCTGTCATTTGGAATGGCAATAACCCATATTGGAGATCTGGTCCATGGAACGGTCTGACTTTCATGGGAGTACCCGAAATGATCTCTGTTTATCGCAGTGGGTTTAATCTTGAGAATGAAAACCAAACTTATTATTTCTCAATTTCTTATAATAACGACAATCAATTACTCAATACCATGATATTAAGCCCGCAAGGCAATCTATTGCAAGAGTACTGGGATCCGTCGGAGGAAAGCTGGGCGGCAGCTTGGTCGGCTCTTAGAACGCCGTGTGATTTCTACGGTGCTTGTGGGCCGTTCGGGATATGTAATGCGAATGCATCTCCAATTTGCAGCTGCTTAAGGGGGTTTAAGCCAAGGAACGCGGCGGAGTGGAGTCAAGGAAATTGGAGTAATGGGTGTGTGAGAAATGCACCGTTGCAGTGTGAGAAGTCCACCAACGCCACCGGTGGTGAGGAAGATGGGTTTTTTAAAGTGGAATTGGTTAAAGTTCCATTTTTGGCAGAGTGGTCTAATTCGTCTTCTTCAGCTAATGAATGCAAACAAGAGTGCTTAGAGAATTGCTTGTGTAAAGCTTATGCATATGAAAATGGTATTGGTTGTATGCTGTGGAGAAGCGACTTAGTTGATGTACAGAAGTTTGAAAGCATTGGAGCTGATCTTTATGTTCGACTGGCGGAGGCAGAGTTAGACACAATTAATGATGCAGAAAGCAAGACTGGAATTATTCTAGCCGCAATTCTTCCAGCAACGCTTATCATCTTCTTCATTGCCATTTGCTTCTGGTGGAGATGGAAGGCTAACAAAAGAGATGAGTATAGCAAAAAAGGAAAGAGATTGAGGTTAAGAAGGGATGATGACATGATTGAGGACAAAATTAAACTTGAAGAACTGCCTGTTTATGAGTTTGAGAAGCTGGCAACCGCAACAGACAGCTTTGATCAACGTAAAAAGCTTGGACAAGGTGGGTTTGGTCCTGTATATAAGGGAGTATTATTAGATGGACAAGAAATAGCAATAAAGAGGCTTTCAAGAGCTTCAAATCAAGGGTATGAAGAGTTCATAAATGAAGTGATCGTGATATCAAAGCTACAACATAGAAACCTCGTACAGCTTCTCGGCTGCTGCATCGAAAGAGAAGAGAAGATGCTTATCTATGAGTATATGCCCAACCTCAGTTTGGATGCCTTCATCTTTGACTCGAACAAACAAAAACTCTTGGATTGGAGAAAACGATTCCACATTGTTGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGAGATTCGAGATTAAGAATCATTCATAGGGATTTGAAGGCTAGTAATATATTATTAGACAAAGATATGAATCCGAAAATCTCGGATTTTGGTATGGCAAGAATTTTCGGTAGTAATGAAGTGCAAGCCAATACTATAAGGGTCGTTGGGACTTATGGGTATATGTCACCTGAGTATGCAATGCAAGGACAGTTTTCCGAGAAATCAGATGTTTTTAGCTTTGGAGTTTTATTGCTTGAGATCATAAGTGGGAGACGGAACACAGGGTTCTACCGCCATGAGTATGCTTTAAGCTTATTGGAGTTTGCATGGAAGTTGTGGACAGAAGACAATCTTATTGCTTTGATTGATCCAACAATATACGAACCGTGCTTTCAATCAGAGATTTTGAGGTGCATCCAAGTGGGACTGTTATGTGTTGAAGAATCTATAAACGATAGACCAACTGTTCTTACCATTATTTCAATGCTCAACAGTGAAATCGTAGACCTTCCTACTCCAAAGCAACCTAGCTTTATTGGTAGACCAGCTCCCAGTAATGCAGACATCTCTCAACAATGCATAAATAAACATTCCGCAAACAGTCTTACACTTACCTCAATTATAGGTCGATGA 2475 41.94 MNPNNICAFSFLLLLSSICFGKDSITSESFIKDPATITSNGSSFQLGFFTPLNSTARYVGIWYNQIPLQTIVWVANANNPLHDSSGIFTISKDGNLVVSNGNHTVLWSSNVTSPTANTTARILDSGNLVLEDPASGLVIWESFKHPSNSFLPPMKLISSKRTTEKVEFTSWKTASDPSTGNFSLALDVRSIPEAVIWNGNNPYWRSGPWNGLTFMGVPEMISVYRSGFNLENENQTYYFSISYNNDNQLLNTMILSPQGNLLQEYWDPSEESWAAAWSALRTPCDFYGACGPFGICNANASPICSCLRGFKPRNAAEWSQGNWSNGCVRNAPLQCEKSTNATGGEEDGFFKVELVKVPFLAEWSNSSSSANECKQECLENCLCKAYAYENGIGCMLWRSDLVDVQKFESIGADLYVRLAEAELDTINDAESKTGIILAAILPATLIIFFIAICFWWRWKANKRDEYSKKGKRLRLRRDDDMIEDKIKLEELPVYEFEKLATATDSFDQRKKLGQGGFGPVYKGVLLDGQEIAIKRLSRASNQGYEEFINEVIVISKLQHRNLVQLLGCCIEREEKMLIYEYMPNLSLDAFIFDSNKQKLLDWRKRFHIVDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVQANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYRHEYALSLLEFAWKLWTEDNLIALIDPTIYEPCFQSEILRCIQVGLLCVEESINDRPTVLTIISMLNSEIVDLPTPKQPSFIGRPAPSNADISQQCINKHSANSLTLTSIIGR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7190230 7194125 - CmoCh13G007110.1 Cmo13g00711 394766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00711 824 Pfam PAN-like domain 345 404 IPR003609 -
Cmo13g00711 824 SUPERFAMILY Protein kinase-like (PK-like) 488 777 IPR011009 -
Cmo13g00711 824 Pfam D-mannose binding lectin 70 172 IPR001480 -
Cmo13g00711 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Cmo13g00711 824 Gene3D Transferase(Phosphotransferase) domain 1 582 784 - -
Cmo13g00711 824 Gene3D - 18 144 IPR036426 -
Cmo13g00711 824 ProSiteProfiles Protein kinase domain profile. 506 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00711 824 Gene3D Phosphorylase Kinase; domain 1 467 581 - -
Cmo13g00711 824 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 13 807 - -
Cmo13g00711 824 Pfam Protein tyrosine and serine/threonine kinase 508 775 IPR001245 GO:0004672|GO:0006468
Cmo13g00711 824 ProSiteProfiles PAN/Apple domain profile. 335 419 IPR003609 -
Cmo13g00711 824 CDD PAN_AP_plant 332 419 - -
Cmo13g00711 824 CDD STKc_IRAK 512 778 - -
Cmo13g00711 824 SUPERFAMILY Hairpin loop containing domain-like 358 415 - -
Cmo13g00711 824 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Cmo13g00711 824 SMART serkin_6 506 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00711 824 CDD B_lectin 31 146 IPR001480 -
Cmo13g00711 824 PIRSF SRK 3 824 IPR024171 GO:0004674
Cmo13g00711 824 SMART blect_4 28 146 IPR001480 -
Cmo13g00711 824 PANTHER - 13 807 - -
Cmo13g00711 824 SMART ntp_6 344 418 IPR003609 -
Cmo13g00711 824 Pfam S-locus glycoprotein domain 204 313 IPR000858 GO:0048544
Cmo13g00711 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 210 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00525 Cmo-Chr3:5400189 Cmo13g00711 Cmo-Chr13:7190230 0 dispersed
Cmo07g00278 Cmo-Chr7:1365082 Cmo13g00711 Cmo-Chr13:7190230 0 dispersed
Cmo13g00711 Cmo-Chr13:7190230 Cmo18g00315 Cmo-Chr18:2022876 8.67E-47 dispersed
Cmo18g00314 Cmo-Chr18:2010095 Cmo13g00711 Cmo-Chr13:7190230 0 dispersed
Cmo13g00710 Cmo-Chr13:7186611 Cmo13g00711 Cmo-Chr13:7190230 0 tandem
Cmo13g00711 Cmo-Chr13:7190230 Cmo13g00712 Cmo-Chr13:7194668 5.77E-11 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74777 PF07714 PK_Tyr_Ser-Thr 1.60E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00711 - - csv:105435156 1187.94