Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00715 ATGGGAGAAGAACTGATTTGCAGGTGGAAGCTTTCGGCTTTTCTCTTTCTCTGGACGACTGTAGCTCTGTTTCCAAGAAAATCATTAGCAATCGATAGCATAAAAACAGGGGAATTAGTCAATGGCAGTACCCAGATATTAGTTTCAGCTGCACAGAACTTTGTGTTGGGAATCTTCAATCCCCAAGGCTCCAAATTTCAGTATTTGGGCATATGGTACAAGAACATCCCACAGACTGTCGTGTGGGTCGCAAACAGAGATAACCCACTTGTAAATTCCTCTGGAAGATTAGCACTCAATGGAGAAGGAAAGATTACTCTGCTCAATGAAACAGGGGGAGTTTTATGGTCGACCCCATCTCCAGGAACCGTGGAACAACCAGTCGTTCAGCTGCTAAACACAGGTAATTTGGTGTTAAGAGAATCTGGGTCGGAGAATTATCTGTGGCAGAGTTTTGATTACCCCTCTGATACTCTGTTACCGGGCATGAAACTCGGTTGGGACGCGAAAACCGGTATGAACCGGAAGTTAACGTCATGGAAAAGCACGAACGATCCGTCGTCTGGGGATTTCACTTATAGTGTGGAGATGAATGGGCTTCCCCAATTTGTAGTTCGCAGAGGACCGATCACAACTTTTCGAAGCGGCCCATGGTACGGCAATGGGTTTAGTGGGTCTGGTCCACTCAGAGAGACCGCAATTTATTTTCCCAAGTTCACTTATAATGCTCATGAAGCCTTTTATTCATATGATGCTGCGAACGATATCTCCGTAAGACTGGTACTGAACGCGGCTGGGTTATTTCAACAGTTTTACTGGGTGGATGATGGAAATTATTGGTACACTCTGTATACATTACCAGGAGATCGCTGCGATGTCTATGGATTCTGCGGGGATTTTGGCGTTTGCACATTTTCCCTCACAGCAGAATGCGATTGCATGGCTGGGTTTGAACCCAAATCGCCCGATGATTGGGAGAAGTTTAGATGGTCTGATGGCTGCGTTAGAAGGGACAATAGAACGTGCGGAAATGGAGAAGGGTTTAAGAGAATCAGCAATGTGAAGTTGCCAGATTCTTCAGGGTATTTGGTGAATGTTAATACAAGCATTGATGATTGCGAGGCGACGTGCTTGAACAACTGCTCTTGCTTAGCCTATGGAATAATGGAGCTTCCGACAGGCGGCTATGGCTGCGTTACCTGGTTTCATAAACTGAGGGATGTTAAATTTGTTCTTCAAAATGGACAAGATCTTTATGTGAGAGTGGCGGCATCAGAATTAGACTCAACCAACAAGAAGCTTATGGTTGCAATTAGTGTGTCTGTGGCTTCATTTCTGGGATTCTTGGTTCTTGTGATTTGCTTTATCCTTGGGCGTAGAAGGAAAGTTAGAGGAGGCAATATGATCTCCCCTGAGATCACTTTAGGAAAGATTCACTCTCAAGAAAAGGAAGTTGAGATGCCAATCTATGACTTTAGGACGATTGAGATTGCCACAAATAGTTTCTCTCTTTCGAATAAGATAGGTGAAGGTGGTTTTGGACCAGTTTACAAGGGAAAGCTTTCTTGTGGGCAGGAGATTGCAGTAAAGAGGCTAGCAGAGGGGTCTGGCCAAGGGAAAAGTGAGTTCAGAAATGAGGTTTTGTTGATCTCACAACTTCAACATCGAAACCTTGTCAAGCTGCTTGGTTTCTGCATTCACCAACAAGAAACATTGCTAGTCTATGAATATATGCAAAACAAAAGCTTAGACTATTTCCTCTTTGATGATAAGAGGCGAGCTTCACTCAAATGGCAAAAGAGATTGGACATCATAATCGGGATAGCTCGAGGACTTCTTTACCTTCACCGAGATTCAAGGCTGAGAATAATACACAGGGATCTCAAAGTAAGTAATATATTACTAGATAATGAAATGAATCCGAAAATTTCAGACTTTGGAATGGCACGCATGTTTGAGGAAGATCAAACTATGACCAAAACCAAAAGAGTTGTCGGGACCTACGGTTATATGTCTCCTGAATATGCACTCGACGGATGTTTCTCATTGAAATCTGACGTATTCAGCTTCGGGGTAATTGTTTTGGAAATCGTTAGTGGTAAGAAGAATCGAGGGTTTTTCCATGAAGATCATCACCTAAATCTTCTTGGACATGCATGGAAGCTTTGGAACGGGGGAAATGGTTTGGAGTTGATGGATGCAGCCTTGGGGGATGAGTTCCAAGGCTCTGAAGCACTGCGATGCATTCAAGTAGGCCTTTTGTGTGTCCAACAGAGCTCCGATGAAAGGCCGACAATGTGGTCAGTACTTTCAATGTTGGAGAGTGAAGACATGTTGTTGTCTCAGCCTAAACAACCTGGATTTTACATGGAAAGAATGTTTTCCAAGACTGACAAATTGCCGGCCGAAACCTCCACTTCCAATGAAGTCACTGTTACACTTCTACATGGTCGTTAG 2457 43.67 MGEELICRWKLSAFLFLWTTVALFPRKSLAIDSIKTGELVNGSTQILVSAAQNFVLGIFNPQGSKFQYLGIWYKNIPQTVVWVANRDNPLVNSSGRLALNGEGKITLLNETGGVLWSTPSPGTVEQPVVQLLNTGNLVLRESGSENYLWQSFDYPSDTLLPGMKLGWDAKTGMNRKLTSWKSTNDPSSGDFTYSVEMNGLPQFVVRRGPITTFRSGPWYGNGFSGSGPLRETAIYFPKFTYNAHEAFYSYDAANDISVRLVLNAAGLFQQFYWVDDGNYWYTLYTLPGDRCDVYGFCGDFGVCTFSLTAECDCMAGFEPKSPDDWEKFRWSDGCVRRDNRTCGNGEGFKRISNVKLPDSSGYLVNVNTSIDDCEATCLNNCSCLAYGIMELPTGGYGCVTWFHKLRDVKFVLQNGQDLYVRVAASELDSTNKKLMVAISVSVASFLGFLVLVICFILGRRRKVRGGNMISPEITLGKIHSQEKEVEMPIYDFRTIEIATNSFSLSNKIGEGGFGPVYKGKLSCGQEIAVKRLAEGSGQGKSEFRNEVLLISQLQHRNLVKLLGFCIHQQETLLVYEYMQNKSLDYFLFDDKRRASLKWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFEEDQTMTKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVIVLEIVSGKKNRGFFHEDHHLNLLGHAWKLWNGGNGLELMDAALGDEFQGSEALRCIQVGLLCVQQSSDERPTMWSVLSMLESEDMLLSQPKQPGFYMERMFSKTDKLPAETSTSNEVTVTLLHGR 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7204480 7208185 + CmoCh13G007150.1 Cmo13g00715 394770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00715 818 Pfam Protein tyrosine and serine/threonine kinase 503 702 IPR001245 GO:0004672|GO:0006468
Cmo13g00715 818 SUPERFAMILY Protein kinase-like (PK-like) 483 774 IPR011009 -
Cmo13g00715 818 ProSiteProfiles Protein kinase domain profile. 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00715 818 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Cmo13g00715 818 CDD PAN_AP_plant 339 423 - -
Cmo13g00715 818 CDD B_lectin 39 155 IPR001480 -
Cmo13g00715 818 Pfam PAN-like domain 342 408 IPR003609 -
Cmo13g00715 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Cmo13g00715 818 Gene3D Phosphorylase Kinase; domain 1 471 577 - -
Cmo13g00715 818 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 816 - -
Cmo13g00715 818 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Cmo13g00715 818 CDD STKc_IRAK 508 774 - -
Cmo13g00715 818 Gene3D - 30 152 IPR036426 -
Cmo13g00715 818 Pfam Domain of unknown function (DUF3403) 775 818 IPR021820 GO:0004674
Cmo13g00715 818 SMART serkin_6 502 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00715 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 816 - -
Cmo13g00715 818 PIRSF SRK 3 818 IPR024171 GO:0004674
Cmo13g00715 818 Pfam D-mannose binding lectin 79 181 IPR001480 -
Cmo13g00715 818 Gene3D Transferase(Phosphotransferase) domain 1 578 785 - -
Cmo13g00715 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Cmo13g00715 818 SMART ntp_6 343 422 IPR003609 -
Cmo13g00715 818 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Cmo13g00715 818 SMART blect_4 38 155 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00715 Cmo-Chr13:7204480 Cmo18g00314 Cmo-Chr18:2010095 0 dispersed
Cmo13g00714 Cmo-Chr13:7197589 Cmo13g00715 Cmo-Chr13:7204480 2.49E-76 tandem
Cmo13g00715 Cmo-Chr13:7204480 Cmo13g00716 Cmo-Chr13:7210209 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74779 PF07714 PK_Tyr_Ser-Thr 2.10E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00715 - - bhj:120084118 1417.91