Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00716 ATGATAAATATTGATAACAATCCGTTTTTCACTAAGAAATTAATCATGAATCCTCCTAAACCGGCCGTCCTCCACATTTCACTGCTTTTAGTCACTTTTGTTGGCAGTTTCTTTACCGTCGCCACCGCCGCCGTCGCCTTCGCCGCCCTAGATAATTCCACTATTCACATCATCAAAGATGGAGATCGCTTGGTGTCCAGCAACAAGAATTTCGCTCTTGGGTTCTTCAGCTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTACAACACAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTAATCGACACCTCAGGAATCTTAGCCCTCGACCGTCATGGCAACCTCCTCGTTTTCTCCGACACACAAACCATATCTCTTTGGTCTACAAACGCTACCCTCCGATCAAACGACGTGTCGGTTCAGCTTTGGAATACGGGAAATCTCGCCCTTGTTGAACGACAGAGCCGAAAGGTTATATGGCAAAGCTTTGATTATCCCTCTGATGTTTTTATTCCGTACATGAAATTGGGGGTGAACCGGCGGACCGGGTTCAGCTGGTTCCTAACTTCATGGAAGGCGCAAAACGACCCGGGGATTGGGAATTTCAGTTGCCGGATCAACCCGACTGGGTATCCGCAGCTGGTTTTGTACCAGGGGGATGTTCCATGGTGGCGGGGAGGGCCGTGGACGGGGCGGAGATGGGCCGGAGTACCTGAAATGACGAGGTCGTTTATAATCAACACATCCTACATCGACAACGCCGAGGAGGTCTCCATAACAAACGGCGTCACGGTCGACACGGTTCTAATGAGAATGACTCTCGACGAATCCGGTTCGTTGCATCGGTCCACGTGGAACGAACAGGACCAAAAGTGGAACGAGTTTTGGTCGACCCCGACCGAGTGGTGCGACAAGTACAACCGGTGCGGTCCGAACTCTAACTGCGACCCGTACAACACGGAGCAGTTCCAATGCAAGTGCCTGCCAGGTTTCGAACCACGGTCCGACCATAATTGGTTCTTGAGAGATCCGTCGGGTGGGTGCATCAGGAAAAGGCCAAACGCCACGTGTGGGAGTGGAGAGGGTTTTGTGAAGGTGGAACGTGTGAAGGTTCCGGACTCATCGACAGCACGTGCGGATAAGAGTATGAGTTTAGAAGCGTGCGAACAAGCGTGTATGAAGGATTGTAACTGTACGGCTTACACGAGCGCAAATGAGACGTCGGGGATCGGGTGCGTGACATGGTATGGAGAGTTGTTAGACACGCGGACCTATGCCAACGTGGGTCAAGATCTGTACGTAAGAGTTGATGCCGTTGAATTAGCTCAGTATTCCCAAAATTCAAATCGTCATCCAACGAAGAAGGTGATAGCCATCGTCGTAGTATGTTTCGTCGCATTGGTGCTACTCGTAGCCTCGCTAGTTTATTTGTGGGAGCTGCTAAAAAAAAGAAGGGAAAGGGAGAGACCACCGAGTTTCTCTGGTAACTTTGGGGACCCACCAAGTACGAAGGAATTTGATGAAAGTAGAACAAGCTCAGATTTGCCTGTGTTTGACTTGGTCACTATAGCTAAGGCAACCGACAATTTTTGTTTTAATAACAAGCTTGGAGAAGGTGGCTTTGGGGCTGTTTATAAGGGAAAGCTTACAAATGGAGAGGAAATTGCAGTTAAAAGGCTAGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTCCAACATAGAAACCTGGTCAGAATTTTAGGGTATTGCGTTAAGAATGAAGAGAAAATGCTTGTGTATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTTAATTGGAGAAAACGCTTTGAAATCATTTGCGGTGTCGCTCGAGGGATGCTGTATCTTCATCAAGATTCGAGATTGAAAATCATTCATCGAGATTTAAAGGCGAGCAATATACTGTTAGATGCTGATTTGAATCCCAAGATTGCTGATTTTGGTATGGCAAGAATATTTGGTCAAGACCAAATTCAAGCGAACACAAATCGAATTGTCGGAACCTATGGTTATATGTCACCTGAATACGCAATGGAAGGCTTATTCTCGGTGAAATCAGATGTATATAGCTTTGGAGTTTTGGTGTTGGAGATGATTACGGGGAAAAAGAACACCAACTATGATTCCTCGTACTTAAACTTGGTCGGACATGTTTGGGAGCTGTGGAAATTGGAGAAGGCAATGGAATTGGTAGACCCAAGTTTGGAAGAATCAAGCAGTGGATATGAAGTGATGAGATGCCTCCAAATTGGGCTGTTATGTGTGCAGGAGGATCCGACAGATCGTCCGACCATGTCGAGTGTGGTGTTCATGTTGGGCAACGAAGTGGGTGTTCCTTCTCCAAAGAAACCTGCTTTTATTTTGAAGAGGAAATACAACAGTGGAGATCCATCCACCAGTACTGAAGGAGCCAACTCTGTAAATGACCTAACAATTTCCATAATCAATGCTCGTTAA 2565 46.47 MINIDNNPFFTKKLIMNPPKPAVLHISLLLVTFVGSFFTVATAAVAFAALDNSTIHIIKDGDRLVSSNKNFALGFFSFNNSTTRRYVGIWYNTIPQLTLVWVANRNQPLIDTSGILALDRHGNLLVFSDTQTISLWSTNATLRSNDVSVQLWNTGNLALVERQSRKVIWQSFDYPSDVFIPYMKLGVNRRTGFSWFLTSWKAQNDPGIGNFSCRINPTGYPQLVLYQGDVPWWRGGPWTGRRWAGVPEMTRSFIINTSYIDNAEEVSITNGVTVDTVLMRMTLDESGSLHRSTWNEQDQKWNEFWSTPTEWCDKYNRCGPNSNCDPYNTEQFQCKCLPGFEPRSDHNWFLRDPSGGCIRKRPNATCGSGEGFVKVERVKVPDSSTARADKSMSLEACEQACMKDCNCTAYTSANETSGIGCVTWYGELLDTRTYANVGQDLYVRVDAVELAQYSQNSNRHPTKKVIAIVVVCFVALVLLVASLVYLWELLKKRRERERPPSFSGNFGDPPSTKEFDESRTSSDLPVFDLVTIAKATDNFCFNNKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDESKRALLNWRKRFEIICGVARGMLYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEMITGKKNTNYDSSYLNLVGHVWELWKLEKAMELVDPSLEESSSGYEVMRCLQIGLLCVQEDPTDRPTMSSVVFMLGNEVGVPSPKKPAFILKRKYNSGDPSTSTEGANSVNDLTISIINAR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7210209 7214392 + CmoCh13G007160.1 Cmo13g00716 394771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00716 854 ProSitePatterns Protein kinases ATP-binding region signature. 545 567 IPR017441 GO:0005524
Cmo13g00716 854 SMART ntp_6 367 445 IPR003609 -
Cmo13g00716 854 Gene3D Phosphorylase Kinase; domain 1 513 614 - -
Cmo13g00716 854 MobiDBLite consensus disorder prediction 498 519 - -
Cmo13g00716 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 238 IPR036426 -
Cmo13g00716 854 Pfam Protein tyrosine and serine/threonine kinase 541 806 IPR001245 GO:0004672|GO:0006468
Cmo13g00716 854 ProSiteProfiles Protein kinase domain profile. 539 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00716 854 PIRSF SRK 20 854 IPR024171 GO:0004674
Cmo13g00716 854 Pfam D-mannose binding lectin 98 201 IPR001480 -
Cmo13g00716 854 Pfam PAN-like domain 366 431 IPR003609 -
Cmo13g00716 854 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 49 851 - -
Cmo13g00716 854 SUPERFAMILY Protein kinase-like (PK-like) 515 808 IPR011009 -
Cmo13g00716 854 CDD PAN_AP_plant 365 445 - -
Cmo13g00716 854 Gene3D - 53 172 IPR036426 -
Cmo13g00716 854 CDD B_lectin 57 175 IPR001480 -
Cmo13g00716 854 Pfam S-locus glycoprotein domain 233 343 IPR000858 GO:0048544
Cmo13g00716 854 Gene3D Laminin 312 360 - -
Cmo13g00716 854 PANTHER - 49 851 - -
Cmo13g00716 854 ProSiteProfiles Bulb-type lectin domain profile. 49 172 IPR001480 -
Cmo13g00716 854 SMART serkin_6 539 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00716 854 CDD STKc_IRAK 545 808 - -
Cmo13g00716 854 Gene3D Transferase(Phosphotransferase) domain 1 615 813 - -
Cmo13g00716 854 ProSiteProfiles PAN/Apple domain profile. 366 446 IPR003609 -
Cmo13g00716 854 SMART blect_4 55 175 IPR001480 -
Cmo13g00716 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01195 Cmo-Chr12:10766717 Cmo13g00716 Cmo-Chr13:7210209 5.97E-114 dispersed
Cmo13g00716 Cmo-Chr13:7210209 Cmo18g00314 Cmo-Chr18:2010095 0 dispersed
Cmo13g00715 Cmo-Chr13:7204480 Cmo13g00716 Cmo-Chr13:7210209 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74780 PF07714 PK_Tyr_Ser-Thr 3.00E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00716 - - cmos:111434312 1670.21