Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00717 ATGGACGATGAGTTTCCACCTGGGATTTGCGGTCGGAAGTTGTGGGATACAACCAAGATCCCGTTCTCGCCGGCGGCCGCCACTCCCTCGTCGTGTTCCGTCAGTGACTCCACCTTCTTGATTGATCCAACCGTTCGAACGCCTTCCAATTGGAACCAAAATTTTCTTGGAGATGATGGACAAAGAGTTGACACCACTTTGATGGTGGATTATGATCACCAAGAAACTAATGCATCCGAGGAGCCACAAAATCCTTCCATTTTCAACGCCGATCATGATTGTATGTTCTTAATGGGCCAAACGCATTCCAACTTTTACGATAATATTGTCACAACTACAAGCCAAAGGTTACCGATGGCTTACCCTTTTGGGATGATCTCCAATGGGTACACTCCAACGTTGTTGCCAAGTTCATTGGATCAACCAAAACAGTTTCTTGTCAACAACCGGACCATTAATAGTTCTTGTCACCCTATGTTTGAAACCCTGAATTTCACAACAAAGCTGATTAGTTACGATGAAGTTGTTCGAGATTCGAGTCGGGTTGAGATGAAAAACAAAAGTAACGAAATTACGACAATCAAAAGGGCAAGGAATGACATGCCATCCTCATTACCCACTTTTAAGGTTCGAAAAGAGAAGCTTGGCGACAAGATCACAGCGCTCCAACAGCTTGTTTCTCCTTTTGGAAAGACTGATACTGCATCAGTTCTACATGAAGCAATTGAGTACATCAAGTTCCTTCACGATCAAGTTCGTGTTTTGAGTACTCCATATATGGAAATGGGCGAGCAGGAGCAAGAGCAAGAGCAACAGGTGACAAATTATGATGGCGGGCAGCTTGTTAAGGAAGAATTGGAAGAGAATAAGAAACAAGATCTAACAAGTAGAGGACTTTGTCTGGTGCCAATTCCAAGTTCAGTTGCATTAGCAAATGGTAATACACTTGATTTCTGGTCGCCCACTTTTGGAGGAACCTTTAGGTAA 987 43.47 MDDEFPPGICGRKLWDTTKIPFSPAAATPSSCSVSDSTFLIDPTVRTPSNWNQNFLGDDGQRVDTTLMVDYDHQETNASEEPQNPSIFNADHDCMFLMGQTHSNFYDNIVTTTSQRLPMAYPFGMISNGYTPTLLPSSLDQPKQFLVNNRTINSSCHPMFETLNFTTKLISYDEVVRDSSRVEMKNKSNEITTIKRARNDMPSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEQEQEQQVTNYDGGQLVKEELEENKKQDLTSRGLCLVPIPSSVALANGNTLDFWSPTFGGTFR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7214808 7217454 - CmoCh13G007170.1 Cmo13g00717 394772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00717 328 CDD bHLH_AtbHLH_like 205 256 IPR045239 -
Cmo13g00717 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Cmo13g00717 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 264 IPR036638 GO:0046983
Cmo13g00717 328 PANTHER TRANSCRIPTION FACTOR BHLH103 67 310 - -
Cmo13g00717 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 310 - -
Cmo13g00717 328 Gene3D - 209 278 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00717 Cmo-Chr13:7214808 Cmo16g00923 Cmo-Chr16:5660098 3.41E-46 dispersed
Cmo13g00717 Cmo-Chr13:7214808 Cmo03g00529 Cmo-Chr3:5415334 7.81E-53 wgd
Cmo13g00717 Cmo-Chr13:7214808 Cmo07g00281 Cmo-Chr7:1377637 2.88E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00717 - - cmos:111434066 660.218