Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00734 ATGTTCCATTCAACCCTTCTCTTTTCCATCATCATCATCAGCAGCAGCAGCAGCCCTGCAGCTGCTCAGCCAAGTATCAGTTGTTCAAGCGACAATGGCAATTACACAGCCAACAGCACCTACAGAGCCAATCTCCACCACATCCTCTCTTCCCTCCCGACCGACAACCGCCTGGACGAAGGCTTCCTCAACACCTCCTATGGACAAAGCCCCGACCGAGTCAATACCATCGCCCTCTGCAGAGGAGACCTTAGCCCAGAGCTCTGTCGCAGTTGCATCAGCGACTCTGTTTTGGACCTTCCCGAACAATGTCCCAATCAAAAGGAAGCTGTAATTTGGTACCCCAATTGCATGTTTCGCTATTCGGATCGACGGATTGTTGGGGTTTTGCGAGATACTCCTGCTTTTTGGATGTGGAACATTCAAGATGCGGTGGACCTGCAAGGGTTCAGCCTGGTGGTACAGGGGCTGCTGAGTGAGCTCGCAAAGGAGGCTGCTTCAGGGGATTCTAAGCTCAAATTTGCTGCTGGGAATGTCAGCACTTTGAACGAGGATTATTTGAATGTTTATGGGATGATGCAGTGCACGCCAGATATTTCACAGGCACAGTGCCTTGATTGCTTGCAAGTTGTTGCTGGCGTTGTTCAAACATGGTGTCCAGGGAAGATTGGAGCCAGAATTATTAGACCCAATTGTTTTCTTAGGTATGAGATTGTCAGTTTCTTTACCTCTACAGCCGTTTCAAGAGTTTCCCAGTCGCCCCCGCCGCCGACACCGCCATCACCTCCCTCCCTTTCACCAAATACAACCACCAATGCAGCAGGAAACGAGTCCGAGAGCTTAAAGACTGTCATCATAATAGTTGTTCCAATGGTTGTGGTTCTTGTATTTATGGCATTAATTGTCAGCATCTTCATGTTTCTAAGAGCAAGAAAACAAAGGGTTAATGGAATTGCAAGTTTAGAACTGGATGACACTGCAGATCTGGAAACTTTGGTGTTTGATATCAGTACTATAAGAACTGCAACAGATAACTTCTCAGAAGCAAATACTATTGGACAAGGTGGATTTGGAGCTGTTTACAAGGGAAGCCTTGTCAATGGGCAAGATATAGCAGTGAAAAGGCTCTCCCAGAACTCCATGCAAGGACAAAGTGAGTTCAAGAATGAAGTCCTGTTAGTGGCTAAACTACAGCACAGGAATTTAGTTCGGCTTCTCGGCTTCTGTCTCCACGAACACGAAAGGCTTTTAGTGTTTGAGTTTGTGAAGAACTCAAGTCTTGATAAATTCATATTTGATCCGTTAAGAAGTCAAGATTTGGACTGGAATGCGCGTTACAAGATCATTGGAGGCGTTGCTAGGGGTCTTGTTTATCTTCATGAAGATTCTCAAATTAAAATCGTTCATCGAGATCTCAAACCTGCTAATATTTTGTTAGACGCAGAAATGAATCCAAAAATTTCAGATTTTGGTATGGCAAGATTGTTTCTACCCGATCAAACACGAGGAGATACAAGTAGAATTGTTGGAACTCAGGGATACATGGCTCCGGAGTATGCAATGTATGGAAAGTTTTCAAACAAGTTGGACGTGTTTAGCTTCGGTGTGTTAGTCTTGGAGATTGTGAGCGGCCAGAAAAACAGCTCTTTCCATCCGGAAGATAACATACATGATCTTATAAGCTACGCATGGAAGAACTGGAGGGCAGGAACAGCGTTGAATGTTGTAGATCCCATTTTGAGAAGTGGGTCAGTTGGTGAAATGAAGAAATGTATTCATATTGGGTTGCTTTGTGCTCAAGAAGATTCAGCTGATAGGCCAACTATGGACACTGTTCTTCTCATGCTTAATAGTGACACAATCACTCTCCCAATACTTTCTCCACCAGCTGATTTCATGACCAGCGAATTGCTTCAAATTTCATTTTCTTATATAACCCATCAATGGCTTCATCGATGGCTACCATTAAAGTGGGCGTCAAACTTCTCAGTTAATCGCTTCCCTCCATTATTCTATCGAATCTTTTTCAGCCGTTTTCTTACTTCTTCGTTTCCGCGTTCTAGTTCATCCTCTCATCATTGCACAATGAGGAACACCCAGACCCAGTTTGCCGTTGCCTTTTTGGTTCTATCGCTTGCCATTAATGTTTCTCACGCCAAACAAATTAAACCCTTCTTCGATTTCATTGAGTTTGATGACTTTCTTAACAAAACCCAACAATGGAAAACGAGTTTTCGTCTCCATTTCCATCAAACCCAGTTTCCGTTTTCGCCTCCCATTGTGATTGCCGGAGTTCTCTGTTTTATCGCCGCTTCTTTATCCAGCGCCGGCGGGATTGGCGGCGGTGGGCTTTACATACCTATTTTGACGATTGTGGCTGGTGTGGACCTCAAAACAGCGTCTAGCCTCTCGGCTTTTATGGTCACTGGAGGGTCGATTGCGAATGTATTTAACAGTTTGTTCTCTAAAAGATCCAAATCAGAGGGGAAGTGTTTGATTAACTTTGATATTGCTCTTTTGACTGAACCGTGCATGTTATTGGGAGTGAGTATTGGAGTTTTATGCAACCTTGCGTTTCCTGAGTGGGTTACTACTATTCTGTTTGCCATTTTTCTTGCTTGGTCGACTTTGAAAACATGTAAAAGTGGGACGGTGTATTGGAAAATGGAAACAGAAGAGCATAGGAATAATGGGTTTAATTTGGAAGATGCATTAGAGAATGAAAATGAAACCATAGCTTTTGAAGAGCCTCTGTTGCCTACACAGAACGATCCCAGATTGAGGCTTCCTTCAATGAAGTTAGGGGCCTTGGTTCTTGTCTGGTCTTGTTTCTACCTTATTTATCTTCTTCGTGGCAACCGCGATGGACAGGGTCTTTTACCGATAGAAACGTGTGGAACGGGTTACTGGGTTATCTCTTCTCTCCAAGTTCCAGTGGCCATAGCTTTCACTCTCTGGATTCTTCACAAACAGAAGGGTCCTGAACCTGAAGATTCCCCTCAGAAGGAGGTAGAAGAAGCACGGCCTGCAGTTGAACCATCAAAGAAACTGATCTTCCCAGTAATGGCACTTTTAGCTGGGATTTTGGGTGGCATGTTTGGGATTGGCGGTGGCATGCTTATAAGCCCTTTCCTTCTTCAAGTTGGAATAGTTCCTGAGGAAACGGCAGCAACTTGCTCCTTCATGGTGTTCTTTTCGGCTACAATGTCAGCTTGCCAGTATTTGCTGCTGGGAATGGAGCATGCTGAAATTGCAGTGATCTTCGCGATCGTCTGCTTCATTTCCTCGGTGCTCGGGTTGGTAGTGATTCAGAAGGGGATTCGTGACTATGGAAGGGCATCTCTCATCATCTTCTCAGTTAGTATAGTGATGGCTTTGAGTACTGTTTTGATGACCACACTTGGTGCCCTCAATGTTTTGAGTGATTACATTGCTGGAAACCCTATGGGATTTAAATCTCCTTGTTAA 3468 44.38 MFHSTLLFSIIIISSSSSPAAAQPSISCSSDNGNYTANSTYRANLHHILSSLPTDNRLDEGFLNTSYGQSPDRVNTIALCRGDLSPELCRSCISDSVLDLPEQCPNQKEAVIWYPNCMFRYSDRRIVGVLRDTPAFWMWNIQDAVDLQGFSLVVQGLLSELAKEAASGDSKLKFAAGNVSTLNEDYLNVYGMMQCTPDISQAQCLDCLQVVAGVVQTWCPGKIGARIIRPNCFLRYEIVSFFTSTAVSRVSQSPPPPTPPSPPSLSPNTTTNAAGNESESLKTVIIIVVPMVVVLVFMALIVSIFMFLRARKQRVNGIASLELDDTADLETLVFDISTIRTATDNFSEANTIGQGGFGAVYKGSLVNGQDIAVKRLSQNSMQGQSEFKNEVLLVAKLQHRNLVRLLGFCLHEHERLLVFEFVKNSSLDKFIFDPLRSQDLDWNARYKIIGGVARGLVYLHEDSQIKIVHRDLKPANILLDAEMNPKISDFGMARLFLPDQTRGDTSRIVGTQGYMAPEYAMYGKFSNKLDVFSFGVLVLEIVSGQKNSSFHPEDNIHDLISYAWKNWRAGTALNVVDPILRSGSVGEMKKCIHIGLLCAQEDSADRPTMDTVLLMLNSDTITLPILSPPADFMTSELLQISFSYITHQWLHRWLPLKWASNFSVNRFPPLFYRIFFSRFLTSSFPRSSSSSHHCTMRNTQTQFAVAFLVLSLAINVSHAKQIKPFFDFIEFDDFLNKTQQWKTSFRLHFHQTQFPFSPPIVIAGVLCFIAASLSSAGGIGGGGLYIPILTIVAGVDLKTASSLSAFMVTGGSIANVFNSLFSKRSKSEGKCLINFDIALLTEPCMLLGVSIGVLCNLAFPEWVTTILFAIFLAWSTLKTCKSGTVYWKMETEEHRNNGFNLEDALENENETIAFEEPLLPTQNDPRLRLPSMKLGALVLVWSCFYLIYLLRGNRDGQGLLPIETCGTGYWVISSLQVPVAIAFTLWILHKQKGPEPEDSPQKEVEEARPAVEPSKKLIFPVMALLAGILGGMFGIGGGMLISPFLLQVGIVPEETAATCSFMVFFSATMSACQYLLLGMEHAEIAVIFAIVCFISSVLGLVVIQKGIRDYGRASLIIFSVSIVMALSTVLMTTLGALNVLSDYIAGNPMGFKSPC 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7283531 7293232 - CmoCh13G007340.1 Cmo13g00734 394789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00734 1155 SMART serkin_6 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00734 1155 ProSiteProfiles Gnk2-homologous domain profile. 23 126 IPR002902 -
Cmo13g00734 1155 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cmo13g00734 1155 Pfam Salt stress response/antifungal 150 237 IPR002902 -
Cmo13g00734 1155 Pfam Salt stress response/antifungal 28 123 IPR002902 -
Cmo13g00734 1155 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 635 - -
Cmo13g00734 1155 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00734 1155 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Cmo13g00734 1155 ProSiteProfiles Protein kinase domain profile. 346 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00734 1155 Gene3D - 23 125 IPR038408 -
Cmo13g00734 1155 Gene3D - 134 241 IPR038408 -
Cmo13g00734 1155 CDD STKc_IRAK 352 617 - -
Cmo13g00734 1155 Pfam Sulfite exporter TauE/SafE 979 1112 IPR002781 GO:0016021
Cmo13g00734 1155 Pfam Sulfite exporter TauE/SafE 701 878 IPR002781 GO:0016021
Cmo13g00734 1155 MobiDBLite consensus disorder prediction 250 275 - -
Cmo13g00734 1155 SUPERFAMILY Protein kinase-like (PK-like) 330 616 IPR011009 -
Cmo13g00734 1155 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 635 - -
Cmo13g00734 1155 ProSiteProfiles Gnk2-homologous domain profile. 132 241 IPR002902 -
Cmo13g00734 1155 Gene3D Transferase(Phosphotransferase) domain 1 422 622 - -
Cmo13g00734 1155 MobiDBLite consensus disorder prediction 252 266 - -
Cmo13g00734 1155 Gene3D Phosphorylase Kinase; domain 1 322 421 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00537 Cmo13g00734 CCT
Cmo07g00286 Cmo13g00734 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00536 Cmo-Chr3:5440855 Cmo13g00734 Cmo-Chr13:7283531 6.77E-135 dispersed
Cmo03g00537 Cmo-Chr3:5445392 Cmo13g00734 Cmo-Chr13:7283531 1.39E-141 dispersed
Cmo03g01181 Cmo-Chr3:9243147 Cmo13g00734 Cmo-Chr13:7283531 5.58E-31 dispersed
Cmo09g00542 Cmo-Chr9:2576555 Cmo13g00734 Cmo-Chr13:7283531 8.01E-39 dispersed
Cmo13g00729 Cmo-Chr13:7267058 Cmo13g00734 Cmo-Chr13:7283531 0 dispersed
Cmo13g00730 Cmo-Chr13:7270647 Cmo13g00734 Cmo-Chr13:7283531 0 dispersed
Cmo13g00734 Cmo-Chr13:7283531 Cmo18g00300 Cmo-Chr18:1951519 0 dispersed
Cmo13g00732 Cmo-Chr13:7274084 Cmo13g00734 Cmo-Chr13:7283531 9.67E-134 proximal
Cmo13g00734 Cmo-Chr13:7283531 Cmo18g00299 Cmo-Chr18:1945510 2.49E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74783 PF00069 Pkinase 1.80E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00734 - - cpep:111783516 1162.9