Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00750 ATGTTGGGAGGGCATGATTATGAAGAACATCATCATCACGAGGAGGATGTTGTTCTCCTGGAGATGACCCAGAAAACCTTCGAAACGGAGCTGGAGAAGTTTGGGGAAGATGATCAGTTGGAGAGCAGCAGCAGATCGGTGAAGGACGCCGCCATGGGAGAGGACGACCCATTTCTTCACAATCACACTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTTCTTTAAGGAATGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTAGGGCTGGATCCCCTCCAAGTCAAGTTCTGGTTTCAAAACAAGCGTACCCAACTCAAGGCTCAACATGAACGCCATGAGAACGCAATCTTGAAGGCTCAAAACGAGAAACTACGAGCAGAGAACATGCGGTACAAGGAAGCTCTAAGCAACACCAGCTGCCCCAATTGCGGCGGCCCTGCCGCTCTCGGCGAGATGTCCTTCGATGACCAACATTTGAGGATCGACAACGCGCAGCTAAGGGACGAGATTGAGAGATTAAACTCAGTTGCTAGCAAGTTTGCTGGGAAGCCATGGGCTTCCCATTCTCGCATCCCGCCCTGCGCCCTTGATCTTGGGGTTGGCAGAGCATTGCAGCCGCCCCAAGCAGAGTTCTTAGGGGAAATCTATGGAGTTGGAGACATGTTGAAGTCTGTCACTACTGAAATTGATAAGCCAGTGATCGTTGAGCTTGCTGTTTCAGCCATGGAAGAGCTTTGCAGAATGGCTCACGCAGGTGAACCCTTGTGGGTTCCTGGAGAAAACTCCATGGAAATGCTTAATGAAGATGAGTACCTCAGGACTTACTCTACAGGAATTGGCCCAAGAATTTTGGGGCTCAGCTTTGAAGCTTCAAGAGAAACTTCCATTGTTGCTTTCAATCATTTAAAACTTATCGACATTCTCATGGACGTCAATCAGTGGTCAAACATATTTTGCGGGATTGTTTCGAGAGCATTGACCCTCGAAGTCTTGTCAACGGGAGTCGGTGGCAGCTATAATGGAGCTCTCCACGTCATGACGGCGGAGTTTCAAGTTCCATCTCCTTTAGTTCCGACTCGAGAAAATTACTTTGTGAGATATTGTAAGCAGCAGACAGATCGGAGTTGGGCTGTGGTCGATGTCTCGCTAGACTATTTACGTCCCACTCCAACATCAAGGACTCGAAGAAGACCGTCGGGTTGCTTAATCCAAGAACTTCCCAATGGTTACTCAAAGATTATGTGGGTGGAACATGTTGAAGTGGATGATCGAGCGGTACACAATTTGTACAAACGAGTGGTCACTTGTGGGCTTGCCTTCGGCGCCAAACGATGGGTCGCTACGCTTGATCGACAGTGCCAACGCCTGACCAACTCCTCTGCTGCCAATATTCCTGCAGTGGACATATGCGTGGTAACCGGGCAAGAGGGGAGGAGGAGCGTAATGAAGCTAGCAGAGCGAATGGTTAGGAGCTTCTGCAGTGGCGTTGGAGCTGCTTCTGCACACAATTGGACAACATTATCCACAATTGATTCCGACCATGTTCGAGTCATGGCAAGAAAGAGTCTCGACGATCCGGGGCGACCTCCTGGAATTGTTCTAAATGCAGCAACTTCATTCTGGATTCCAATTCCCCCTAATAGGGTCTTCCATTTTCTTCGAGATCAAAACACTCGCAGTCAATGGGATGTTCTTTCAAATGGTGGGTTGGTCCAAGAAATGGCTCGCATTGGCAATGATCGCAACCCGGGGAACTGTGTGTCGTTGCTTCGTGTTAACAGTACAAATTCAAGCCAGAGCAACATGCTGATACTACAAGAGAGTTGCAGCGACATTAGTGGTTGCTACATAACCTATGCACCAGTCGACACCGTCGCTATGAACATGGTGTTGAGCGGCGGAGACCCTGATTACGTTGCTTTGTTGCCGTCCGGATTCGCCATACTGCCTGATGGACCTAGTGGCCCCGATGCGCCAGCGGGAATTCTGGAGTTCGGGTCCGGTGGCTCCTTGTTGACAGTTGCATTTCAGATATTGGTGGATTCAGTGCCAACGGCCAAACTGTCTCTAGGGTCGGTGGCGACGGTGAACAGCCTCATCAAGTGCACGGTCGAGCGGATTAGAGCTGCGGTCATGTGTGAACATCCATGA 2196 49.77 MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEDDQLESSSRSVKDAAMGEDDPFLHNHTNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQLKAQHERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDDQHLRIDNAQLRDEIERLNSVASKFAGKPWASHSRIPPCALDLGVGRALQPPQAEFLGEIYGVGDMLKSVTTEIDKPVIVELAVSAMEELCRMAHAGEPLWVPGENSMEMLNEDEYLRTYSTGIGPRILGLSFEASRETSIVAFNHLKLIDILMDVNQWSNIFCGIVSRALTLEVLSTGVGGSYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQTDRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGYSKIMWVEHVEVDDRAVHNLYKRVVTCGLAFGAKRWVATLDRQCQRLTNSSAANIPAVDICVVTGQEGRRSVMKLAERMVRSFCSGVGAASAHNWTTLSTIDSDHVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRSQWDVLSNGGLVQEMARIGNDRNPGNCVSLLRVNSTNSSQSNMLILQESCSDISGCYITYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPSGPDAPAGILEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAAVMCEHP 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7339496 7344024 + CmoCh13G007500.1 Cmo13g00750 394805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00750 731 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Cmo13g00750 731 SUPERFAMILY Bet v1-like 242 471 - -
Cmo13g00750 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 37 728 - -
Cmo13g00750 731 CDD homeodomain 65 124 IPR001356 GO:0003677
Cmo13g00750 731 MobiDBLite consensus disorder prediction 31 61 - -
Cmo13g00750 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 37 728 IPR042160 -
Cmo13g00750 731 SMART START_1 251 470 IPR002913 GO:0008289
Cmo13g00750 731 Pfam START domain 252 470 IPR002913 GO:0008289
Cmo13g00750 731 SUPERFAMILY Bet v1-like 491 723 - -
Cmo13g00750 731 CDD START_ArGLABRA2_like 246 469 - -
Cmo13g00750 731 ProSiteProfiles START domain profile. 242 473 IPR002913 GO:0008289
Cmo13g00750 731 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Cmo13g00750 731 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Cmo13g00750 731 Coils Coil 117 152 - -
Cmo13g00750 731 Pfam Homeodomain 66 121 IPR001356 GO:0003677
Cmo13g00750 731 Gene3D - 58 140 - -
Cmo13g00750 731 Gene3D - 309 470 IPR023393 -
Cmo13g00750 731 SMART HOX_1 64 127 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00291 Cmo13g00750 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00167 Cmo-Chr2:799348 Cmo13g00750 Cmo-Chr13:7339496 0 dispersed
Cmo13g00750 Cmo-Chr13:7339496 Cmo20g00616 Cmo-Chr20:3019339 0 dispersed
Cmo19g00128 Cmo-Chr19:739126 Cmo13g00750 Cmo-Chr13:7339496 1.22E-20 dispersed
Cmo01g01197 Cmo-Chr1:9700078 Cmo13g00750 Cmo-Chr13:7339496 2.33E-116 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo13g00750 Cmo-Chr13:7339496 0 wgd
Cmo13g00750 Cmo-Chr13:7339496 Cmo19g00954 Cmo-Chr19:8710347 0 wgd
Cmo13g00750 Cmo-Chr13:7339496 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo13g00750 Cmo-Chr13:7339496 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10847 PF01852 START 5.40E-48 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00750 K09338 - csv:101212604 1191.41