Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00768 ATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGTTTGTTTCCCATATCTACATTATCTATTAACTCTGCGAGTTCTAATTCATGGATTCTCGATAGTGGAGCTACGGATCATATAGTATCAAAATCTTCTGTTATGACTGAACCAAAGGCTGCCATCATGTCTGCAATAAATTTGCCTAATGGAGAGACAGCACGTGTGTCACATACTGGCAATATTTCCCTTAGCCCTAACCTTCAATTAAACAACGTTTTATGTGTGCCTTCATTCAATTTAAACCTAATGTCGATCAGCAAACTTACCAATAACTTGAAATGTTATGTCACCTTCTATCCTGATTCTTGTGTTATGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGATATCCTTGTGGTCATAAAGGTTACAAGTTGTATGACATGCAATCTCACAAATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCCTGTTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGCCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGATACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTCCAAAGCAGATTACTCTTTGTTTACTAAGAGTAAAGGTACTTCTTTCACTGCAGTTCTAATCTATGTTGATGATATTCTGTTGACAGGCAATGATCTCGAAGAAATTCAATATCTCAAGACTAGTTTACTCCAGAAATTTCTTATCAAAGATTTAGGAAATTTGAAATATTTTCTAGGCATTGAATTTTCTCGATCTAGAAAAGGAATTTTTATGTCTCAAAGGAAGTATGCTCTAGACATCCTTCAAGACACAGGTCTTACAGGAGCACGTCCAGACAAATTTCCTATGGAGCAAAATCTGAAACTTTCTTTAACTGAAGGAGAGAAGTTGAATGATCCAAGTAAATACAGACGGTTGATTGGCAGATTAATATATTTGACCGTCACTAGGCCTGACATAGCTTATTCAGTTCGTATGCTTAGCCAATTTATGCATGAACCAAGAAAACCACATTGGGAGGCAGCTCTTCGAGTTCTGAGGTACATCAAAGGCACTCCTGGTCAAGGACTTCTACTGCCATCTGAAAACAATTTAAGATTACAGGCATATTGCGATTCTGACTGGGGTGGTTGTCGAACTTCCAGACGATCTATTTCTGGGTTCTGCATTTTCCTCGGAAATTCAATTATTTCTTGGAAGTCTAAAAAGCAAACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTTTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGGTGTGATCGACATACACTCTCCAACTTGA 2562 40.09 MADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLFPISTLSINSASSNSWILDSGATDHIVSKSSVMTEPKAAIMSAINLPNGETARVSHTGNISLSPNLQLNNVLCVPSFNLNLMSISKLTNNLKCYVTFYPDSCVMQDLATGKMIGSGKQFGGYPCGHKGYKLYDMQSHKFFISRDVKFCEDDFPFSSASQTSTLAPSTPVVPLHDPSYSNIHPPPSIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGANHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQSKADYSLFTKSKGTSFTAVLIYVDDILLTGNDLEEIQYLKTSLLQKFLIKDLGNLKYFLGIEFSRSRKGIFMSQRKYALDILQDTGLTGARPDKFPMEQNLKLSLTEGEKLNDPSKYRRLIGRLIYLTVTRPDIAYSVRMLSQFMHEPRKPHWEAALRVLRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIFLGNSIISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQAGIIKPCYVSTKMQLADVFTKALGRQQFDFLKDKLGVIDIHSPT 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7434032 7437406 - CmoCh13G007680.1 Cmo13g00768 394823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00768 853 MobiDBLite consensus disorder prediction 1 20 - -
Cmo13g00768 853 MobiDBLite consensus disorder prediction 229 272 - -
Cmo13g00768 853 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 370 611 IPR013103 -
Cmo13g00768 853 PANTHER GAG-POL-RELATED RETROTRANSPOSON 231 592 - -
Cmo13g00768 853 MobiDBLite consensus disorder prediction 209 312 - -
Cmo13g00768 853 CDD RNase_HI_RT_Ty1 696 835 - -
Cmo13g00768 853 PANTHER CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE 231 592 - -
Cmo13g00768 853 SUPERFAMILY DNA/RNA polymerases 369 802 IPR043502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01528 Cmo-Chr1:11803674 Cmo13g00768 Cmo-Chr13:7434032 0 dispersed
Cmo09g01254 Cmo-Chr9:10810615 Cmo13g00768 Cmo-Chr13:7434032 0 dispersed
Cmo09g01319 Cmo-Chr9:11922580 Cmo13g00768 Cmo-Chr13:7434032 6.69E-10 dispersed
Cmo10g01270 Cmo-Chr10:13088354 Cmo13g00768 Cmo-Chr13:7434032 1.70E-74 dispersed
Cmo13g00768 Cmo-Chr13:7434032 Cmo09g00168 Cmo-Chr9:760025 1.14E-15 dispersed
Cmo18g01001 Cmo-Chr18:10906944 Cmo13g00768 Cmo-Chr13:7434032 1.57E-25 dispersed
Cmo13g00768 Cmo-Chr13:7434032 Cmo11g01473 Cmo-Chr11:10360084 1.23E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00768 - - rcn:112199378 826.239