Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00771 ATGTCTTGTTCAAATCTCACCATGTTGGTGTCCTCAAAATCCGCCGTCTCTGATGCCTCCTCCCTTTCATTCCGATCAGTTCTAAGCCCTTTTAAGCTCCCTTCCCACAACTCAACCTCAACCTACCCTACCAGATCATGGTCAGTTACCCCAATTCATTGCGGTCTTCGGGATCTCCGAGACCGTATCGATTCAGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTCGCCGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTTAATGGAAGACCCTTCTCAGAAGCCTTGGTTGAGGTCCTTTACAACATCAATGAGCAACTTCAAACAGAAGACGTAGATGTTCCTTTAACCAAAGTAAGACCAGTCAAGAAAGTTGCATTAGTTGTTGTCACCGGCGACAGAGGTCTTTGCGGCGGTTTCAACAACGCCATCATTAAGAAAGCTGAAGCCAGAATCTCGGAATTGAAGGAATTGGGTCTTGAGTACACTGTCATCAGCGTTGGCAAAAAGGGTAACTCCTACTTCCTCCGTCGGCCTTACATTCCGGTCGATAAGTTCCTCGAAGGCGGCACGCTTCCGACAGCCAAAGAAGCTCAAGCCATTGCTGATGATGTCTTCTCCCTCTTCATCAGTGAGGAGGTTGACAAAGTAGAGCTTTTGTACACCAAATTCGTGTCATTGGTGAAATCCGACCCTGTTATTCACACCCTTCTTCCGCTCTCGCCCAAGGGCGAGATCTGCGACATAAACGGTGTCTGTGTCGACGCCGCCGAAGATGAATTTTTCAGGTTGACAACAAAGGAAGGGAAGCTGACAGTGGAGAGGGATACGGTGAGGACAAGCACCTCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTAAACAGCCAGATTTTGAGGTCACTGCAGGAGTCTCTGGCCAGTGAGCTCGCTGCTAGAATGAGCGCCATGAGCAGTGCCAGTGACAATGCTTCTGAGCTGAAGAGGACTCTGTCGATTGTGTACAACAGACAGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGACATGA 1131 48.36 MSCSNLTMLVSSKSAVSDASSLSFRSVLSPFKLPSHNSTSTYPTRSWSVTPIHCGLRDLRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAEARISELKELGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDTVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSSASDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7446276 7447406 + CmoCh13G007710.1 Cmo13g00771 394826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00771 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Cmo13g00771 376 Gene3D - 123 246 - -
Cmo13g00771 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 375 - -
Cmo13g00771 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Cmo13g00771 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo13g00771 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 271 375 - -
Cmo13g00771 376 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 55 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00560 Cmo13g00771 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00771 Cmo-Chr13:7446276 Cmo13g01124 Cmo-Chr13:9141563 3.18E-18 dispersed
Cmo16g00898 Cmo-Chr16:5274939 Cmo13g00771 Cmo-Chr13:7446276 2.62E-141 transposed
Cmo13g00771 Cmo-Chr13:7446276 Cmo18g00273 Cmo-Chr18:1797316 1.72E-14 wgd
Cmo13g00771 Cmo-Chr13:7446276 Cmo03g00560 Cmo-Chr3:5539010 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00771 K02115 - csv:101214408 632.484