Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00788 ATGGCTTCCTCATCATCCCACCTTCTTCTAACTCTTCTCATCATTATCTCACTCATCCAATCCTCCTATCAAGATTACTACACCCCAACCAAGAACAACATGAACATAATCGACTCTTGCTGGCGTTCATCCTCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCAACTGCGCGGTGGGCTACGGCAAGGACGCAATTGGAGGCAAATTTGGCACCATTTACGTAGTCACCGACCCATCTGACAACCCTTCAAACCCCAAATATGGAACGTTGCGTTATGGTGTGATTCAAAACAAGCCACTTTGGGTTGTGTTTGCTAAGAGCATGGTTATTGTGTTGAAGAATGAGCTGATGATAAATAGTTTCAAGACCATTGATGGACGTGGTGCTAATGTGGAGATTGCTTATGGGCCTTGCATTACGGTGCAAGGGGTTAGCCATGTTATTATACATGGAATTAGTATCCATGATTGTAAGCCTGCCAAAGCTGGGCTTGTTAGAGACACTGTCACACATGTCGGCAAACGTAGAGGCTCTGATGGTGATGCCATTTCTATATTTGCTTCTTCCCATGTTTGGATTGATCATTGTTACTTAGCTCGATCCACTGATGGTCTTATTGATATCATTCATGCTTCCACGGCTGTTACTGTCTCAAATAACTACTTCTCCCAACATGACAAGGTGATGCTGCTTGGACATAACGATGGGTTCACCGATGATAAAATTATGAGGGTCACCATTGTCTTCAACCGCTTCGGAGCTGGCCTTATCGAGAGGATGCCAAGGGTTCGGTTCGGTTACGCCCACGTAGCCAACAATCGATACGACGAGTGGAAAATGTACGCGATAGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTCGTAGCTCCCAAGAACTCAAATGCCAAACAGGTAACAAAGAGAGAGGTCAACAAAGGGTGGAATAACTGGAAATGGAGATCCTCAAGAGACGTGTTCTTGAACGGCGCTTACTTTGTGCAATCTGGGTGGGGAAGTTGCAGCCCATTCTACACAAGAGCTCAGTCCTTTCCAGTGGCTCCAGGCTCCAAGGTTCCAGCTTTGACTGCAAATTCTGGGCCACTTCGTTGCTCCATTGGCAAACGTTGCTGA 1146 46.34 MASSSSHLLLTLLIIISLIQSSYQDYYTPTKNNMNIIDSCWRSSSNWAKNRQALANCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWVVFAKSMVIVLKNELMINSFKTIDGRGANVEIAYGPCITVQGVSHVIIHGISIHDCKPAKAGLVRDTVTHVGKRRGSDGDAISIFASSHVWIDHCYLARSTDGLIDIIHASTAVTVSNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPKNSNAKQVTKREVNKGWNNWKWRSSRDVFLNGAYFVQSGWGSCSPFYTRAQSFPVAPGSKVPALTANSGPLRCSIGKRC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7521413 7523259 - CmoCh13G007880.1 Cmo13g00788 394843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00788 381 Pfam Pectate lyase 114 299 IPR002022 -
Cmo13g00788 381 PANTHER PECTATE LYASE 16-RELATED 14 379 - -
Cmo13g00788 381 PANTHER PECTATE LYASE 18-RELATED 14 379 IPR045032 GO:0030570
Cmo13g00788 381 Gene3D - 34 374 IPR012334 -
Cmo13g00788 381 SMART amb_all 108 305 IPR002022 -
Cmo13g00788 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cmo13g00788 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00574 Cmo13g00788 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00788 Cmo-Chr13:7521413 Cmo13g00799 Cmo-Chr13:7568287 3.72E-145 dispersed
Cmo13g00788 Cmo-Chr13:7521413 Cmo03g00574 Cmo-Chr3:5590040 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00788 K01728 - csv:101211379 694.115