Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00794 ATGGATCAGTTCAATCTTTTGAATTGCTCTCTATTTTTCCTACTGTTCTTCATTTTTCTCAAGTTGTTTAGAGCAAAAAAAGTGAACTTACCTCCATCACCACCGAAGCTACCAATACTTGGAAACCTTCATCAGCTGGGCAGGTATCCCCATCGATCGCTGCAAGAACTCTCCAAAAAGTATGGTCCTCTCATGTTTCTGCGACTGGGATTGATTCCAACTCTTGTGGTTTCCTCAGCTGATATTGTCAGAGAGATCTTTAAGAATCATGATATCAGTTTTTCTAACAGGCCCAAATCAACCGCTGCCAATTTGTTCTTCTATGGATACAAAGATGTGGGGTTTTCTCCATATGGGGAATACTGGAGAGGATTAAAAAAGATTTGCACTCTTGAACTTCTAAGTCAGAGAAGAGTGCATGAATTTCAGTATGTGAGGGAAGAAGAAGTTGAAATCCTGGTGAATAAGGTACATAAAGCAAGTTCTTCAGGTTTATCTGTAAATCTTAGTGAGTTGATTACCTCAACCTCAAACAACATAGTTTCAAGATGCATATTTGGAGAGAAATTTGAAGATGAAAATGGAAAGAGCAGATTTGGTGAACTAACAAGAAGGATGGCTAAATTAGTTGTGGCTTTTAGCGTGGGAGATTTTTACCCTGCTTTTGGATGGATTGACAATATCACAGGCTTAATTGGGCAATTGAAAGAAACATCTCGAGCTCTAGATACTTTTCTTGAACAATTGATTGAAGAGCACAAGACAAAGAAGAATGGCGATTTTCAAGGCGACAGAGAAGATTTTGTGGATATTCTTCTTCAAGTTCAGCAGAAGGATGATCTTGGTTTCGAATTCACTCAAGAAAGTTTAAAATCAGTGTTAGAGGATATGTTCATAGCTGGAACGGATACGACGGCATCAGTATTGGAATGGGCGATTGCAGAGCTAGCAAGAAATCCAACAATAATGAAGAAAGCACAACAAGAAATCAGAGAAGTGGTGGGCAAAAAATCAAAGATAGATAGCGATGATATCGTTAAAATGGAATACCTTAAAAGTGTTATCAAAGAATCACTTAGGGTTCATCCACCTGCTCCTCTGTTATTACCTCGAGAAACATCTGAAATGGTGAAGCTGGGAGGATACTGTATTCCATCAAAAACCAGAGTGTTCTTCAATGTTTGGGCGATTCAAAGGGACCCAAGAATCTGGAAGAATCCAGAGGATTTCATCCCGGAGCGATTTGTGAACAACCCAGTTGATTTCAAAGGACAAGAGTGCCATTGCCTCCCATTTGGTGGCGGGAGAAGAAGCTGTCCAGGGATGAATTTCGCTTTTGCATCAATCGAATATGTGTTGGCTAACCTTCTACACTCCTTTGATTGGAAGCTGCCTGATGACAGTATGATGGCTAAAGACTTGGACATGAGTGAAGATATGGGGCTCGCTCTCATCAAGAAGCATCCCCTTGTTCTTAAGCCAGTAACATGTTCAACTTAA 1500 40.07 MDQFNLLNCSLFFLLFFIFLKLFRAKKVNLPPSPPKLPILGNLHQLGRYPHRSLQELSKKYGPLMFLRLGLIPTLVVSSADIVREIFKNHDISFSNRPKSTAANLFFYGYKDVGFSPYGEYWRGLKKICTLELLSQRRVHEFQYVREEEVEILVNKVHKASSSGLSVNLSELITSTSNNIVSRCIFGEKFEDENGKSRFGELTRRMAKLVVAFSVGDFYPAFGWIDNITGLIGQLKETSRALDTFLEQLIEEHKTKKNGDFQGDREDFVDILLQVQQKDDLGFEFTQESLKSVLEDMFIAGTDTTASVLEWAIAELARNPTIMKKAQQEIREVVGKKSKIDSDDIVKMEYLKSVIKESLRVHPPAPLLLPRETSEMVKLGGYCIPSKTRVFFNVWAIQRDPRIWKNPEDFIPERFVNNPVDFKGQECHCLPFGGGRRSCPGMNFAFASIEYVLANLLHSFDWKLPDDSMMAKDLDMSEDMGLALIKKHPLVLKPVTCST 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7543201 7544953 - CmoCh13G007940.1 Cmo13g00794 394849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00794 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Cmo13g00794 499 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PANTHER CYTOCHROME P450 71B11-RELATED 6 496 - -
Cmo13g00794 499 Pfam Cytochrome P450 31 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 Gene3D Cytochrome P450 20 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 SUPERFAMILY Cytochrome P450 31 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 6 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00794 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101206414 837.025
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00536 Cmo13g00794 CCT
Cmo10g00092 Cmo13g00794 CCT
Cmo07g00285 Cmo13g00794 CCT
Cmo13g00794 Cmo18g00165 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00794 Cmo-Chr13:7543201 Cmo18g00169 Cmo-Chr18:1173597 0 dispersed
Cmo13g00794 Cmo-Chr13:7543201 Cmo13g00796 Cmo-Chr13:7545859 6.37E-167 proximal
Cmo10g00091 Cmo-Chr10:399381 Cmo13g00794 Cmo-Chr13:7543201 8.43E-155 wgd
Cmo11g00066 Cmo-Chr11:310428 Cmo13g00794 Cmo-Chr13:7543201 1.61E-133 wgd
Cmo13g00794 Cmo-Chr13:7543201 Cmo18g00162 Cmo-Chr18:1148717 6.17E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g5 . . . . . . . . Cmo13g00794 . . Cma07g00295 . . Sed14g1327 . Cpe10g00803 Bhi03g00622 Tan03g2277 Cmetu04g2154 . . . . Cla01g02181 . . . . . . . . . . Lsi01g00391 Csa06g03549 . Cme08g00439 . Blo14g00013 Bda01g00138 . . . Bma07g00054 . . Cmo03g00536 Cmo07g00285 Cma13g00707 . . . . Cpe20g00387 Bhi08g01767 . . . . . . Cla03g00479 . . . . . . Lsi02g00644 Csa01g01116 . Cme12g01515
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00794 Cmo_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0