Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00798 ATGGAATCTACTCCTCTTGCCGCCTCCGTCCCTCCCACCGCCCTTCCCGATGACCTCTACTGCAATTTCCCGGCCACCGTCGTCTCCCACATCGTTACGTCTTCCATATTCAGGGAGCTTCCTGAACCTGACGTCCAAATCCTTGCCTCCGGTGGACTTCGAATCCCGGCCCATTCCGGGATCCTGGCTTCGATTTCGCCGGTCCTCGAACAATTGATAGATCGGCCGAGGAAGAAGCGGAGCGCTATGAAAGTGATTTCGATCGTTGGAGTTCCCTCAGACGCTGTCGTTTCCTTCGTTCGGTTCCTCTACAGTTCTAGGTTTAGATCTGCATCTCTTACAAATTCCGGTTTCGATTTGATTTCAATTTCTGACGGAAAGGATGGAAAATTTCCTTGCAGATGCACGGTGGAGCATCTTGAGAAGCACGGAATTCATCTACTGGCTCTGTCGCACGTTTACATGGTGCCGCAATTGAAAGCGATGTGTACTAAAGATTTGGCTCAGCGGCTTACGATCGAAAGCGTTGTGGACGTTCTGCAACTCGCCAGGCTCTGCAACGCATCGGATCTTTACCTCAAATGCATGAAATTCGTGGCTGATCATTTTAAATTCGTTGAGAAAACTGAGGGATGGCAGTTTATTCAAGATCATGATCCTTGGCTTGAGCTTGATATTCTTAAGTTCATCGACGATACCGAATCGAGGAAACAGAGGAACAGGAGGATAAGAAAAGAGAGGAAGTTATATCTAGAGCTACACGAAGCTATGGAGTGTTTAGAACACATATGTTCAGAAGGTTGCACAATAGTGGGGCCTTACAACGTGGAGCCAAAGAAGGAGAGAGGACCCTGCAGCCATTACTCCACGTGTCACGGCCTCCAGCTTCTGATCAAACACTTCGCCACGTGTAAGAAGCGAACCAACGGCCTAGGATGTGGGCGGTGCAAGCGCATGTGGCAGCTCCTGAAGCTCCACTCCTCCATCTGCGACCATTCCGAGTGCTGCAAAGTCCCTCTCTGCCGGAAATTCAAACAGCGGTCGTCGCCAGACGACGGCAACAAGCGCAAGGACGACGCGCAGTGGAAGATGCTTGTCCGCAAAGTGGTTTCCGCCAAAGCCATGTCTTCCCTGTCTTTGAGCAATATGAAGATGCCGGATGTGGAGGAGGAGAGGGCCATCAGGCCGCGTAGGATCGGGAGCTTTAGGTTGCAGTCGGGTCGACGGCAGAGATGA 1236 51.29 MESTPLAASVPPTALPDDLYCNFPATVVSHIVTSSIFRELPEPDVQILASGGLRIPAHSGILASISPVLEQLIDRPRKKRSAMKVISIVGVPSDAVVSFVRFLYSSRFRSASLTNSGFDLISISDGKDGKFPCRCTVEHLEKHGIHLLALSHVYMVPQLKAMCTKDLAQRLTIESVVDVLQLARLCNASDLYLKCMKFVADHFKFVEKTEGWQFIQDHDPWLELDILKFIDDTESRKQRNRRIRKERKLYLELHEAMECLEHICSEGCTIVGPYNVEPKKERGPCSHYSTCHGLQLLIKHFATCKKRTNGLGCGRCKRMWQLLKLHSSICDHSECCKVPLCRKFKQRSSPDDGNKRKDDAQWKMLVRKVVSAKAMSSLSLSNMKMPDVEEERAIRPRRIGSFRLQSGRRQR 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7560951 7563236 - CmoCh13G007980.1 Cmo13g00798 394853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00798 411 ProSiteProfiles BTB domain profile. 43 112 IPR000210 GO:0005515
Cmo13g00798 411 Pfam TAZ zinc finger 254 341 IPR000197 -
Cmo13g00798 411 Pfam BTB/POZ domain 43 110 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00798 - - - csv:101209491 669.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00798 Cmo18g00179 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00665 Cmo-Chr7:2996202 Cmo13g00798 Cmo-Chr13:7560951 4.38E-70 dispersed
Cmo13g00798 Cmo-Chr13:7560951 Cmo07g01187 Cmo-Chr7:6430413 1.48E-09 dispersed
Cmo13g01167 Cmo-Chr13:9353100 Cmo13g00798 Cmo-Chr13:7560951 1.78E-149 transposed
Cmo18g00179 Cmo-Chr18:1225731 Cmo13g00798 Cmo-Chr13:7560951 7.41E-129 transposed
Cmo18g00560 Cmo-Chr18:4493334 Cmo13g00798 Cmo-Chr13:7560951 6.49E-147 transposed
Cmo13g00798 Cmo-Chr13:7560951 Cmo18g00178 Cmo-Chr18:1224378 2.96E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10849 PF02135 zf-TAZ 9.60E-10 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00798 Cmo_Chr13 FPKM 0.0 0.0 0.0 14.447075 36.557552 46.26025 40.271694 0.0 0.0 0.0