Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00799 | ATGGCACCGCCAACAGTCGTTCTCTCTCTCCTCTCCCTCTTTTTCCTCTCCGTCTCTCTCTCCGCCGCTCTCTCCGCCTCCCCTGCCGCCGTACCTAACCCGGAAATCGTTGTAGAAGAAGTACACAGATCCATAATCAATGCGACGAAGAGGAGAAATTTGGGGTATCTCTCATGTGGGACCGGAAATCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGGAGAAAAATCGACAGAGACTAGCTGACTGTGGAATCGGCTTTGGAAAAAACGCCATCGGCGGTCGTGACGGCCGAATCTACGTCGTCACCGACGCCGGCGACGATGACCCTGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTCATCCAAGACGAACCCCTCTGGATCACCTTCGCTCGCGACATGGTCATTCGATTAAAAGAGGAACTAATCATGAACTCCTTCAAAACCATCGACGGCCGTGGTGCGAGCGTCCACATCGCCGGCGGCCCCTGCATTACGATTCAATACGTAACAAACATCATAATCCACGGTCTCAACATTCACGACTGTAAACCAGGGGGAAACACCGACGTTCGAGATTCCCCTCGGCATTTCGGATTCAGAACCATATCGGACGGCGACGGCGTTTCAATCTTCGGTGGTAGCCATGTTTGGGTCGATCATTGCTCTTTATCAAACTGTAACGATGGTTTAATCGACGCGATTCATGGGTCCACAGCCATCACGATTTCAAACAATTACATGACGCATCACGATAAAGTGATGCTATTAGGCCACAGCGATTCGTACACACAAGACAAGAATATGCAAGTCACCATAGCTTTCAACCACTTCGGCGAAGGGCTTGTTCAAAGAATGCCCAGATGCCGACATGGGTACTTCCATGTAGTGAACAATGACTACACGCATTGGGAAATGTACGCCATCGGAGGTAGCGCCGCGCCGACCATCAACAGTCAGGGGAACAGATTCGTTGCACCAAATGACAGATTCAGCAAAGAAGTGACGAAATACGAGGATGCACCGGAGAGTGAATGGAAGAATTGGAACTGGCGGTCGGTTGGGGATCTGATGGTAAACGGTGCGTTTTTCACAGCCTCCGGCGCCGAATCGTCGTCCAGCTACGCCAGAGCGTCGAGCTTAGGGGCGCGGCCGTCGTCTCTTGTCGGAACAATCACGACGAATGCGGGTGCACTGAGCTGCAGAAAGGGCTCCCGCTGCTGA | 1236 | 52.83 | MAPPTVVLSLLSLFFLSVSLSAALSASPAAVPNPEIVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGRIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWITFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSVGDLMVNGAFFTASGAESSSSYARASSLGARPSSLVGTITTNAGALSCRKGSRC | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7568287 | 7569912 | - | CmoCh13G007990.1 | Cmo13g00799 | 394854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00799 | 411 | SMART | amb_all | 137 | 334 | IPR002022 | - | |
Cmo13g00799 | 411 | Pfam | Pectate lyase | 147 | 328 | IPR002022 | - | |
Cmo13g00799 | 411 | PANTHER | PECTATE LYASE | 29 | 408 | - | - | |
Cmo13g00799 | 411 | Gene3D | - | 62 | 404 | IPR012334 | - | |
Cmo13g00799 | 411 | PANTHER | PECTATE LYASE 18-RELATED | 29 | 408 | IPR045032 | GO:0030570 | |
Cmo13g00799 | 411 | SUPERFAMILY | Pectin lyase-like | 39 | 406 | IPR011050 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 85 | 102 | IPR018082 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 109 | 134 | IPR018082 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 145 | 161 | IPR018082 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 209 | 230 | IPR018082 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 289 | 308 | IPR018082 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 311 | 330 | IPR018082 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 353 | 377 | IPR018082 | - | |
Cmo13g00799 | 411 | PRINTS | Pollen allergen Amb family signature | 382 | 405 | IPR018082 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo13g00799 | Cmo18g00180 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00805 | Cmo-Chr1:4233678 | Cmo13g00799 | Cmo-Chr13:7568287 | 4.89E-63 | dispersed | |
Cmo03g00574 | Cmo-Chr3:5590040 | Cmo13g00799 | Cmo-Chr13:7568287 | 1.90E-146 | dispersed | |
Cmo04g02791 | Cmo-Chr4:20087052 | Cmo13g00799 | Cmo-Chr13:7568287 | 0 | dispersed | |
Cmo05g00062 | Cmo-Chr5:229530 | Cmo13g00799 | Cmo-Chr13:7568287 | 0 | dispersed | |
Cmo13g00788 | Cmo-Chr13:7521413 | Cmo13g00799 | Cmo-Chr13:7568287 | 3.72E-145 | dispersed | |
Cmo13g00799 | Cmo-Chr13:7568287 | Cmo14g01918 | Cmo-Chr14:14249841 | 0 | dispersed | |
Cmo13g01161 | Cmo-Chr13:9340364 | Cmo13g00799 | Cmo-Chr13:7568287 | 7.89E-91 | dispersed | |
Cmo13g00799 | Cmo-Chr13:7568287 | Cmo18g00180 | Cmo-Chr18:1237313 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00799 | K01728 | - | csv:101209736 | 768.459 |