Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00799 ATGGCACCGCCAACAGTCGTTCTCTCTCTCCTCTCCCTCTTTTTCCTCTCCGTCTCTCTCTCCGCCGCTCTCTCCGCCTCCCCTGCCGCCGTACCTAACCCGGAAATCGTTGTAGAAGAAGTACACAGATCCATAATCAATGCGACGAAGAGGAGAAATTTGGGGTATCTCTCATGTGGGACCGGAAATCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGGAGAAAAATCGACAGAGACTAGCTGACTGTGGAATCGGCTTTGGAAAAAACGCCATCGGCGGTCGTGACGGCCGAATCTACGTCGTCACCGACGCCGGCGACGATGACCCTGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTCATCCAAGACGAACCCCTCTGGATCACCTTCGCTCGCGACATGGTCATTCGATTAAAAGAGGAACTAATCATGAACTCCTTCAAAACCATCGACGGCCGTGGTGCGAGCGTCCACATCGCCGGCGGCCCCTGCATTACGATTCAATACGTAACAAACATCATAATCCACGGTCTCAACATTCACGACTGTAAACCAGGGGGAAACACCGACGTTCGAGATTCCCCTCGGCATTTCGGATTCAGAACCATATCGGACGGCGACGGCGTTTCAATCTTCGGTGGTAGCCATGTTTGGGTCGATCATTGCTCTTTATCAAACTGTAACGATGGTTTAATCGACGCGATTCATGGGTCCACAGCCATCACGATTTCAAACAATTACATGACGCATCACGATAAAGTGATGCTATTAGGCCACAGCGATTCGTACACACAAGACAAGAATATGCAAGTCACCATAGCTTTCAACCACTTCGGCGAAGGGCTTGTTCAAAGAATGCCCAGATGCCGACATGGGTACTTCCATGTAGTGAACAATGACTACACGCATTGGGAAATGTACGCCATCGGAGGTAGCGCCGCGCCGACCATCAACAGTCAGGGGAACAGATTCGTTGCACCAAATGACAGATTCAGCAAAGAAGTGACGAAATACGAGGATGCACCGGAGAGTGAATGGAAGAATTGGAACTGGCGGTCGGTTGGGGATCTGATGGTAAACGGTGCGTTTTTCACAGCCTCCGGCGCCGAATCGTCGTCCAGCTACGCCAGAGCGTCGAGCTTAGGGGCGCGGCCGTCGTCTCTTGTCGGAACAATCACGACGAATGCGGGTGCACTGAGCTGCAGAAAGGGCTCCCGCTGCTGA 1236 52.83 MAPPTVVLSLLSLFFLSVSLSAALSASPAAVPNPEIVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGRIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWITFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSVGDLMVNGAFFTASGAESSSSYARASSLGARPSSLVGTITTNAGALSCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7568287 7569912 - CmoCh13G007990.1 Cmo13g00799 394854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00799 411 SMART amb_all 137 334 IPR002022 -
Cmo13g00799 411 Pfam Pectate lyase 147 328 IPR002022 -
Cmo13g00799 411 PANTHER PECTATE LYASE 29 408 - -
Cmo13g00799 411 Gene3D - 62 404 IPR012334 -
Cmo13g00799 411 PANTHER PECTATE LYASE 18-RELATED 29 408 IPR045032 GO:0030570
Cmo13g00799 411 SUPERFAMILY Pectin lyase-like 39 406 IPR011050 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cmo13g00799 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00799 Cmo18g00180 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00805 Cmo-Chr1:4233678 Cmo13g00799 Cmo-Chr13:7568287 4.89E-63 dispersed
Cmo03g00574 Cmo-Chr3:5590040 Cmo13g00799 Cmo-Chr13:7568287 1.90E-146 dispersed
Cmo04g02791 Cmo-Chr4:20087052 Cmo13g00799 Cmo-Chr13:7568287 0 dispersed
Cmo05g00062 Cmo-Chr5:229530 Cmo13g00799 Cmo-Chr13:7568287 0 dispersed
Cmo13g00788 Cmo-Chr13:7521413 Cmo13g00799 Cmo-Chr13:7568287 3.72E-145 dispersed
Cmo13g00799 Cmo-Chr13:7568287 Cmo14g01918 Cmo-Chr14:14249841 0 dispersed
Cmo13g01161 Cmo-Chr13:9340364 Cmo13g00799 Cmo-Chr13:7568287 7.89E-91 dispersed
Cmo13g00799 Cmo-Chr13:7568287 Cmo18g00180 Cmo-Chr18:1237313 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00799 K01728 - csv:101209736 768.459