Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00801 ATGGCTCTTGTACACCAACACCACCTCCCACAGTCATTTCAGTCCATTCGCAAGGCCAATCTCAAACAATCCACTTCTAATTCTTGTTTATTTTTTCAATTCAGTACTCGGAAGCTTGCCGGCTGCTTATGTGCGACATCTCCAAATCCCATCAGTCAGTCTCCTTCTCCGATTTTCCTCCCTTTTCTCGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGATGAAGAAGAACATAAAGAAGTTCTTGGAGGAAACACGACGGAAGATTGGAACGATCCATTAGTCAGATTTTTCAAATCCCGGACTTCAACAACGCAAGATCCATTACCCGAAAGCAAATTATCCCTTCAGAAGAACCGCCGTTCGTCGTGGCATCTTGCCTCCGACGTTGAATGTTCCGTTGAAGCTGAAATTGCACCCGGTGAAGACAAGAAACAATCCGGTTTGGTGAGTAGGAATTCTAGGGCATTACCGGATGGTGTCGTCGGAGACATTGTGCGAACTGCAAGGAATTTGCCTCAAAATACCACTCTAGGAGAGGCTTTGGGTGATTTTGAAGGAAAAATTGATGAGAAAGAATGTCTGGAGGTGCTGCGCTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGCTTGTATTTCTTTGAATGGATGGGGTTGCAGGAGCCTTCGCTTGTTACACCTCGTGCTTATTCTATTCTCTTTCCATTGTTGGGAAGAGCTGGAATGGGAGATAAAATTATGGTGTTGTTCAAGAACATTCCACTCAAGAAGGAGCTTCAGGATGTTCATGTGTATAATTCTGCAATGTCTGGGCTTATGGTCTGTAAGAGGTATAATGATGCTTGCGAGGTGTACGCGGCTATGGAAACAAACAAGGTTAATCCCGATCATGTGACATGTTCTATAATGATTACAGTCATGAGAAAGATCGGTCGCAGCGCGAAGGATTCTTGGGATTACTTCGAGAAAATGAACGAAAAAGGAGTAAAATGGAGTCCAGAAGTTTTGGGTGCTCTGATTAAAGCGTTCTGTGACGAGGGGCTGAAGAGTCAAGCTCTTATCATCCAACTGGAGATGGAGAAGAAAGGGGTTACTTCGAACGCAATCGTGTATAACACGATCATGGATGCATTTAGTAAATCAAATCAAATCGAGGAAGCCGAAGGTCTCTTTGCTGAAATGAAAGCCAAAGGAGTGAAACCAACGAGTGCAACTTTTAACATCTTAATGGATGCATACAGCAGGAGGATGCAACCCGAGATTGTTGAGAAGCTTCTGATCGAAATGAAGGACACGGGATTCGAGCCGAACGTGAAGTCATACACTTGCTTGATTAGTGCTTACGGGAGGAAGAAGACAATGAGCGACATGGCTGCAGATGCATTCTTGAGGATGAAAAAGAATGGTATAAAGCCAAATTCTCATTCATATACAGCTCTGATTCATGCTTATTCTGTTAGCGGTTGGCACGAGAAAGCTTACTCGACGTTCGAGAACATGCTGCAAGAAGGTTTAAAGCCTTCCATTGAAACTTACACGACGCTACTCGACGCGTTTAGGCGTGCAGGTGATACCGAGGCATTGATGAAAATCTGGAAGTTAATGATTAGAGAAAAAGTAGCAGGAACAAGAGTAACATTCAACATACTGCTAGATGGGTTTGCAAAACAAGGTCATTATATTGAAGCAAGAGATGTGATATCCGAGTTCAGCAAGACTGGGCTGCAGCCAACCATTATGACATACAACATGCTGATGAACGCATATGCAAGGGGAGGCCAACATCTAAAGATGCCGCAGCTCCTGCAAGAGATGGCTGCTCGGGAGCTAAAACCCGACTCCGTTACTTACTCAACCATGATTTATGCGTTCGTACGTGTTCGGGATTTCAAACGAGCGTTCTTCTATCACAAGAAGATGGTAAAAAGTGGGCAAGTGCCTGATGTGAAGTCGTATCAGAAACTTCGATCAATTTTGGATGCGAAACTCGATACGAAGAACAGGAAGGATAAGAGTGCCATTTTGGGTATAATGAACAGCAAATTGGGTATGGTGAAAGCTAAGAAGAAGGGCAAGAAAGACGAGTTTTGGAAGAACAAGAGAAAGTATGTGAAAACTCTGAGAATTTCTCCTAATGAACAAGCGAAAGTGGAGACTGGGAGTTGA 2169 43.85 MALVHQHHLPQSFQSIRKANLKQSTSNSCLFFQFSTRKLAGCLCATSPNPISQSPSPIFLPFLEEEEEEEEEEEDEEEHKEVLGGNTTEDWNDPLVRFFKSRTSTTQDPLPESKLSLQKNRRSSWHLASDVECSVEAEIAPGEDKKQSGLVSRNSRALPDGVVGDIVRTARNLPQNTTLGEALGDFEGKIDEKECLEVLRLLGEENLVVCCLYFFEWMGLQEPSLVTPRAYSILFPLLGRAGMGDKIMVLFKNIPLKKELQDVHVYNSAMSGLMVCKRYNDACEVYAAMETNKVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNEKGVKWSPEVLGALIKAFCDEGLKSQALIIQLEMEKKGVTSNAIVYNTIMDAFSKSNQIEEAEGLFAEMKAKGVKPTSATFNILMDAYSRRMQPEIVEKLLIEMKDTGFEPNVKSYTCLISAYGRKKTMSDMAADAFLRMKKNGIKPNSHSYTALIHAYSVSGWHEKAYSTFENMLQEGLKPSIETYTTLLDAFRRAGDTEALMKIWKLMIREKVAGTRVTFNILLDGFAKQGHYIEARDVISEFSKTGLQPTIMTYNMLMNAYARGGQHLKMPQLLQEMAARELKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLRSILDAKLDTKNRKDKSAILGIMNSKLGMVKAKKKGKKDEFWKNKRKYVKTLRISPNEQAKVETGS 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7580948 7584363 + CmoCh13G008010.1 Cmo13g00801 394856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00801 722 Gene3D Tetratricopeptide repeat domain 560 677 IPR011990 GO:0005515
Cmo13g00801 722 Gene3D Tetratricopeptide repeat domain 456 559 IPR011990 GO:0005515
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cmo13g00801 722 Gene3D Tetratricopeptide repeat domain 316 455 IPR011990 GO:0005515
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Cmo13g00801 722 PANTHER OS03G0856100 PROTEIN 1 707 - -
Cmo13g00801 722 Pfam PPR repeat family 578 626 IPR002885 -
Cmo13g00801 722 Pfam PPR repeat family 368 415 IPR002885 -
Cmo13g00801 722 Pfam PPR repeat family 262 307 IPR002885 -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Cmo13g00801 722 Pfam Pentatricopeptide repeat domain 498 555 IPR002885 -
Cmo13g00801 722 Pfam Pentatricopeptide repeat domain 425 485 IPR002885 -
Cmo13g00801 722 Coils Coil 60 83 - -
Cmo13g00801 722 MobiDBLite consensus disorder prediction 64 79 - -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 473 IPR002885 -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cmo13g00801 722 PANTHER - 1 707 - -
Cmo13g00801 722 Gene3D Tetratricopeptide repeat domain 162 315 IPR011990 GO:0005515
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 616 650 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 406 439 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 512 541 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 265 297 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 582 615 IPR002885 -
Cmo13g00801 722 TIGRFAM PPR: pentatricopeptide repeat domain 476 509 IPR002885 -
Cmo13g00801 722 MobiDBLite consensus disorder prediction 64 94 - -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 332 IPR002885 -
Cmo13g00801 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00801 - - - bhj:120069367 1201.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00801 Cmo18g00086 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00801 Cmo-Chr13:7580948 Cmo11g00887 Cmo-Chr11:4542584 3.14E-13 dispersed
Cmo13g00801 Cmo-Chr13:7580948 Cmo19g00650 Cmo-Chr19:7005190 1.15E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00801 Cmo_Chr13 FPKM 15.84792 18.064674 17.302464 17.500643 24.444201 23.075363 24.468113 21.83532 20.649176 20.937784