Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00804 ATGATTGCAACTTGTGATGCTAATGGTACTTGCACGATTTCCCACGTACTGCCTAACATATGGACTGGTAATAGTACACACGCTAGTGGAATTGAACGATATCAACTTGTTGGGTCGACTGCATCAGATCCCTTAGATAATTATAAGAAATCTGTTGTATCTATTATAGAGGAATACTTTAGCACTGGTGACGTGGAATTGGCTGCATTTGATCTTGGAGATCTAGGCTCAAGTAACTATCATCCTTACTTTATTAAACGGCTAGTATCTATGGCAATGGACAGACATGATAAGGAGAAGGAAATGGCTTCAGTTCTGCTATCAGCTTTGTATGTCGATGTTATCAGTCCTGCCCATATAAGAGATGGATTTTTTATGTTACTTGAATCTGCTGATGATCTTGCTGTCGATATACCAGATGCAGCTGATATCCTTGCTTTGTTCTTAGCTCGTGCTGTAGTTGATGACATACTTCCCTTAGCATTTCTAGCCAGGGCAAGGAAGGCATTGTTGGAACCATCCAAAGGAACTCAGGCTATCCAAACCGCCGAGAAGAGCTATCTCTCTGCTCCACATCATGCCGAACTTGTGGAGAAAAAATGGGGAGGCAGCACACATTTTACAGTTGAGGAAGTGAAGAAAAAGATAGCATATCTCTTAAGGGAATATGTTGAGAATGGAGATACCATCGAGGCTTGCAGATGCATAAGGCAGTTAAGCGTTTCATTCTTTCATCATGAGGTTGTGAAGAGGGCTTTGATTCTTGCCATGGAGATCCGAAAAGCAGAACCCCGGATACTGAAGCTTCTGAATGAAGCTGCTGAAGAAGGTCTGATAAGCTCAAGTCAAATGATTAAGGGGTTTTCTAGGCTGGCGGAGAGCCTTGACGACCTTGCTCTTGATATACCATTGGCAAAATCGTTGTTTGAATCGTTGGTCCCGAGGGCCATATCTGAAGGATGGCTCGATGTTTCCTTCATGAAATCTTCGGATGAAGATATAGATGTTGGATCTACAGATGAAAAGTTGAGGTGCTATAAGGAAGAGGTTGTAACTATAATTCATGAATATTTTCTTTCAGATGACATTCCTGAATTAATAAGAAGCCTAGAAGATCTTGGTGCACCCGAGTATAATCCAATCTTTTTGAAGAGGCTGATTACACTTGCAATGGATAGGAAAAACAGAGAAAAAGAAATGGCTTCAGTGCTCCTTTCAGTTCTTCACATTGAGATATTTTCTACAGAGGATATAGTCAATGGTTTTGTAATGCTACTCGAGTCTGCAGAAGATACAGCCCTAGACATTTTGGATGCATCAAATGAGCTTGCTCTCTTTCTAGCCAGGGCTGTGATTGACGACGTCTTGGCTCCTCTAAATCTCGAGGATATCGCTTGTAGGTTGATCCCAAATTGTACAGGTAGTGAAACTGTTCGAATGGCCCGGTCATTAATTGCAGCTCGGCATGCTGGTGAGCGGCTTTTAAGATGCTGGGGCGGTGGAACTGGCTGGGCAGTAGAGGATGCAAAGGACAAGATTCAGAAGCTCTTAGAGGAGTACGAAAGTGGAGGAGTTGTGAGTGAAGCTCTTCAGTGCATCCGTGATCTAGGGATGCCTTTCTTCAACCACGAGGTTGTAAAGAAGGCATTGGTTATGGCCATGGAGAAGAAGAACGACAGGATTCTAGATCTTCTACAGGAATGCTTCAATGTTGGCCTGATCACCATCAACCAGATGACCAAAGGCTTCTCTAGGATCAAAGACAGCCTCGACGATCTCGCACTCGACATTCCAAATGCAAGCAAGAAATTCACTTCCTATGTGGAGCACGCCCAAAAGAAAGGATGGCTTTTACCATCCTCCTTCGGATCATCTGGTGATGCAGCAGATTCTTCAGTGCTCTTGGCTGCAGCTTCCTGA 1920 43.44 MIATCDANGTCTISHVLPNIWTGNSTHASGIERYQLVGSTASDPLDNYKKSVVSIIEEYFSTGDVELAAFDLGDLGSSNYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYVDVISPAHIRDGFFMLLESADDLAVDIPDAADILALFLARAVVDDILPLAFLARARKALLEPSKGTQAIQTAEKSYLSAPHHAELVEKKWGGSTHFTVEEVKKKIAYLLREYVENGDTIEACRCIRQLSVSFFHHEVVKRALILAMEIRKAEPRILKLLNEAAEEGLISSSQMIKGFSRLAESLDDLALDIPLAKSLFESLVPRAISEGWLDVSFMKSSDEDIDVGSTDEKLRCYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKRLITLAMDRKNREKEMASVLLSVLHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEDIACRLIPNCTGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVSEALQCIRDLGMPFFNHEVVKKALVMAMEKKNDRILDLLQECFNVGLITINQMTKGFSRIKDSLDDLALDIPNASKKFTSYVEHAQKKGWLLPSSFGSSGDAADSSVLLAAAS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7587336 7589351 + CmoCh13G008040.1 Cmo13g00804 394859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00804 639 Gene3D - 496 622 - -
Cmo13g00804 639 Gene3D - 198 331 - -
Cmo13g00804 639 SUPERFAMILY ARM repeat 346 501 IPR016024 -
Cmo13g00804 639 ProSiteProfiles MI domain profile. 211 332 IPR003891 -
Cmo13g00804 639 Pfam MA3 domain 347 456 IPR003891 -
Cmo13g00804 639 Pfam MA3 domain 510 617 IPR003891 -
Cmo13g00804 639 Pfam MA3 domain 212 323 IPR003891 -
Cmo13g00804 639 Pfam MA3 domain 49 159 IPR003891 -
Cmo13g00804 639 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 27 621 - -
Cmo13g00804 639 ProSiteProfiles MI domain profile. 47 168 IPR003891 -
Cmo13g00804 639 ProSiteProfiles MI domain profile. 508 627 IPR003891 -
Cmo13g00804 639 SUPERFAMILY ARM repeat 46 206 IPR016024 -
Cmo13g00804 639 Gene3D - 340 488 - -
Cmo13g00804 639 Gene3D - 41 189 - -
Cmo13g00804 639 ProSiteProfiles MI domain profile. 345 466 IPR003891 -
Cmo13g00804 639 SUPERFAMILY ARM repeat 208 328 IPR016024 -
Cmo13g00804 639 SMART ma3_7 509 618 IPR003891 -
Cmo13g00804 639 SMART ma3_7 48 159 IPR003891 -
Cmo13g00804 639 SMART ma3_7 346 457 IPR003891 -
Cmo13g00804 639 SMART ma3_7 212 323 IPR003891 -
Cmo13g00804 639 PANTHER PROGRAMMED CELL DEATH 4 27 621 IPR039778 GO:0045892
Cmo13g00804 639 SUPERFAMILY ARM repeat 505 622 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00804 - - - csv:101209979 1066.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00804 Cmo18g00181 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00804 Cmo-Chr13:7587336 Cmo17g00073 Cmo-Chr17:376950 2.54E-06 dispersed
Cmo13g00804 Cmo-Chr13:7587336 Cmo18g00181 Cmo-Chr18:1249537 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00804 Cmo_Chr13 FPKM 17.616091 17.352894 41.696896 42.959351 1.517508 1.343277 1.038255 19.187788 18.430754 17.693789