Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00811 ATGCATTTTGCAAAGCAGCTCGTCACTGAACTCGGCGAGTTAAACCGGAGCTCCCACGGTGGCTCTGCGGCTTCGACAAAGGCATTGCCAGACTGGTCTAGAGCAAGAACAGTGGCTCGGAAGCAAGAGATGAGCAGCAAGGTAGAAGCCTGTCCAGAATGCACCCAAAGATGCTTACGTTTTCATAGAAAGACAGGGAATTCATCATCTGTTACGTCGTTCTTCAAAGTTATGTTTGGGGATCGCTTTTCTGAAGTTGTGTTCTTCCCACCTATTTTTGCATCTACCGTGTTGAAGTTGGTTAATAAAAAGGTTGTTCTTGAGGATTCTCTTGGACAACAGTGGAAGGTAACAGTATCCAATTGCGAAGGATCTCTTGCTTTTCAAGAAGGGTGGAGTGCTTTTTCATCAGAGCATAGCTTAGAAATTGGAGATTTTGTGATCTTCAATCACATCATGGACTTGTACTTCAATGTTAGTATCTACACTAAAACTGGTTGTGAAAAAGTATGGTTTGCTGAAAAAAGCTATACGAGGAAAAGAATTAGAAGTACTTGTCCTGTACTTGAGATAACTAATGAAGGTTTGTCAAATCCACAAGCTTCAAGCCCCTCTGTGGGTTCTGGATCCAATGTGACACTATCTCAAGATAAATTTCACGTGGCTGGTTATCAAAACATGAATGTATACCAGGGTAAAAGGCGAAAGTACCAGAGCAACGATGAATGGCACGGACCTTTAGACATTGTTGATGATTCGTATTGTTTAATCGACAGGAACAAGGATGTAGGACCGGAGGAAAACAGAAGCCCCTTATTTAACTTGTTTTCCATGGAAATGCAGATGGTCAATTCCTGCATCAATGAGAATTCCACAAATAAAGCTGCTCAGGATGAGATAAACCCGAACTGTGCTTCCTCATCGCAGAATACTATAATCAGTGTCGGCCCAGTTAACAGTGTTCCAGTAGATATAAGAGGAGACATGGAAGTATTGCCTTCAAATGTATCTGCTAACAAGATAAATGATAAAAGACAGTGTTTTGAGGAGGCTGACATAAAGATGAGTGTCTCTGATAAAGATCCTTGCCACGACAGGACTATAGAGGTTCCTTTTATTTCATCTGCAACAAATTCCGATCGAAACGTGGAGCCTTTTTGTGACATGCCATTAAAAATCATAAGAGACTACCAGAATGTACCAGCAATGTGCAACACAGCATCGACAATTACAAGACATGATCAGGGGTCTAGTGTGAAACAGGAGTACCCTCCAAATTCCTTGAAGGTTAAAAAATGGGACGAGAAAAAGATCATTAAAATGGAACCATTGGAAATCAAAACAGAAGTGAACAACTGCGGAGACTTCATTGAACAAATACTGGAGCCAAAAGTCATTAAGGAGGAGTTCCTTGAAACGTCTAACCAAAGTGGTAGAGAAATTAATGATACAACTGATAATGCAGACCCGATTGGAACTCCAGCCCGTATCTCCTGTGTAGTGGCTAAAGATACTCTATCCTTTCTGAGGTCCTTTAGCAAATCTCGTGTTAGTCCCAAGACATTGATGCTTACATACACACACTCATGTATGGACATATTTATGTGTGATATTGAGCTGCCGATGACATTTCACCTACCATGTTCGAGAGGTCGAAGAAATCCAGAGAACAAGAAGGTAGTGTTTCTGCGGGATCCCAGTAAGAGATTGTGGCCAATTCTTTACCATGAGATGCCTAATGTTCAAGTTCTAACAAGTGGGTGGGAAGCTTTTTGCTGTGCAAATAGAATTGAATCTGGGGACGAGTGTTTGTTTCATGTCAAGGATGAGCTCGAACGTGAATACAACGTTAGCATTAGGAAATGTAAAAACTAG 1875 41.28 MHFAKQLVTELGELNRSSHGGSAASTKALPDWSRARTVARKQEMSSKVEACPECTQRCLRFHRKTGNSSSVTSFFKVMFGDRFSEVVFFPPIFASTVLKLVNKKVVLEDSLGQQWKVTVSNCEGSLAFQEGWSAFSSEHSLEIGDFVIFNHIMDLYFNVSIYTKTGCEKVWFAEKSYTRKRIRSTCPVLEITNEGLSNPQASSPSVGSGSNVTLSQDKFHVAGYQNMNVYQGKRRKYQSNDEWHGPLDIVDDSYCLIDRNKDVGPEENRSPLFNLFSMEMQMVNSCINENSTNKAAQDEINPNCASSSQNTIISVGPVNSVPVDIRGDMEVLPSNVSANKINDKRQCFEEADIKMSVSDKDPCHDRTIEVPFISSATNSDRNVEPFCDMPLKIIRDYQNVPAMCNTASTITRHDQGSSVKQEYPPNSLKVKKWDEKKIIKMEPLEIKTEVNNCGDFIEQILEPKVIKEEFLETSNQSGREINDTTDNADPIGTPARISCVVAKDTLSFLRSFSKSRVSPKTLMLTYTHSCMDIFMCDIELPMTFHLPCSRGRRNPENKKVVFLRDPSKRLWPILYHEMPNVQVLTSGWEAFCCANRIESGDECLFHVKDELEREYNVSIRKCKN 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7626643 7630536 + CmoCh13G008110.1 Cmo13g00811 394866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00811 624 CDD B3_DNA 73 162 IPR003340 GO:0003677
Cmo13g00811 624 Pfam B3 DNA binding domain 540 621 IPR003340 GO:0003677
Cmo13g00811 624 Pfam B3 DNA binding domain 74 161 IPR003340 GO:0003677
Cmo13g00811 624 SUPERFAMILY DNA-binding pseudobarrel domain 522 614 IPR015300 -
Cmo13g00811 624 SMART B3_2 74 165 IPR003340 GO:0003677
Cmo13g00811 624 SMART B3_2 538 623 IPR003340 GO:0003677
Cmo13g00811 624 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 50 620 IPR044837 -
Cmo13g00811 624 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 50 620 - -
Cmo13g00811 624 SUPERFAMILY DNA-binding pseudobarrel domain 68 167 IPR015300 -
Cmo13g00811 624 ProSiteProfiles B3 DNA-binding domain profile. 72 165 IPR003340 GO:0003677
Cmo13g00811 624 ProSiteProfiles B3 DNA-binding domain profile. 523 623 IPR003340 GO:0003677
Cmo13g00811 624 Gene3D - 504 623 IPR015300 -
Cmo13g00811 624 Gene3D - 67 167 IPR015300 -
Cmo13g00811 624 CDD B3_DNA 533 621 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00811 - - - cmo:103484129 752.666
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00811 Cmo18g00189 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00811 Cmo-Chr13:7626643 Cmo09g00192 Cmo-Chr9:863015 2.33E-09 dispersed
Cmo13g00811 Cmo-Chr13:7626643 Cmo18g00189 Cmo-Chr18:1282878 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g901 . . . . . . . . Cmo13g00811 Cmo18g00189 . . . . . Cpe20g00331 . . . . . . . . . . . . . . . . Cone16ag0046 . . Lsi02g00470 Csa01g00928 Chy12g01199 Cme12g01623 . . . . . . . . . . . Cma13g00779 . Car13g00627 Car18g00205 Cpe09g00985 . Bhi08g01703 Tan05g2910 . . . . . Cla03g00327 Cam03g0344 Cec03g0335 Cco03g0348 Clacu03g0345 Cmu03g0951 Cre03g0643 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005615 0 3 0 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 6 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10851 PF02362 B3 6.90E-11 CL0405 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00811 Cmo_Chr13 FPKM 32.359531 32.455002 46.822891 46.952614 38.130314 46.020203 43.561035 45.058491 42.890938 42.524155
Cmo13g00811 Cmo_Chr18 FPKM 65.517609 73.70858 93.941231 89.469109 60.037098 71.76033 49.823837 91.173096 86.104156 92.094032