Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00825 ATGGCAGATCGGAATCCCAGCTTAAACGCCGCCCATTTCGTTGATCATCGAAGCGGTTTCTGTCCTCAGACGAAGATTTTCCATAGCCTCCGACCACCTCTCTTAATTCCGCCATTATCTCAGCCTCTCTCCGTTACCGAACACGCCCTTTCTCTCCTTCAATCGTCCCCTCCTCCTTCAAATGCTGCCGTTCTCGTCGACTCCAACTCTGGTGTGCATCTCTCCTATGCCATTTTCCTCCGTCAAATACGAACACTCGCCTCTAATCTTAAAGCGTTAACCTCACTCTCCAATGGCCAAGTGGCTTTTATTCTCGCACCGACTTCTTTGGAAGTCCCTGTGTTGTATTTTGCTCTGTTATCTCTCGGTGTTGTTATCTCTCCGGCTAATCCGATTGGTTCCGATTCGGAGATTTCTCATCAGATTCGACTCAGTAAACCGGTTATTGCCTTCGCTACATCCTCGACGGCGTCCAAGCTCCCCAAGCTTCAACTCGGCACCGTCCTGATTGATTCTCCTGCGTTTCTCTCCATGATGACCGAAATCAATAGATCTGATGGTCTTGCCGACGTCAAAGTCGATCAATCCGACTCGGCGGCGATCCTGTACTCGTCAGGAACGACAGGACGAGTGAAAGGCGTGTTACTGAGTCATCGAAACCTTATTGTGGTGAACTCTAGTCCTAATCCTCTTCTATCTGAGGTCAACAACGGAGAGACGGAGCCACGTCAGGTGTCTCTGTGTCTGTTGCCTCTGTTCCATGTTTTCGGATTCGTCATGTTGCTTCGAGCGATTTCACGAGGAGAAACATTGGTTCTGATGCAAAAATTCGACTTCGTGGAGATGCTATCAGCAGTAGAGAAGTTTAGAGTTACGTACATCCCAGTTTCTCCGCCGCTAGTGGTGGCGATGGCCAAGTCGGAACTGGTGGCGAAATACGATCTCAGTTCTCTTCAAGTTTTGGGGTGCGGCGGCGCTCCTCTTGGGAAAGAAGTCATCGAGAAATTCCATCAGAAATTGCCCAAAGTTGAAATTATCCAGGGATATGGGTTGACAGAGAGTACAGCGGGGGCAGCAAGAAGTATGGGGCCCGAGGAAAGCAGCAACACGAAGTCAGTAGGCCGCCTATCTGAAAATATGGAAGCCATGATTGTGGATCCTGATTCTGGAGAGGCCTTGCCTCCTGGCCATAGAGGAGAGCTTTGGCTGCGAGGTTATGTAGGAGATGCCAAGGCAACTACCGAAACCCTGCATCCAGATGGATGGCTAAAGACTGGTGATCTTTGCTATTTTGATTCCGATGGATTCCTCTACATTGTTGACAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCTATTTGAAATGACTTTCGAATCAAACCCACTCGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATCATTGACGCTGCTGTGATACCCTATCCCGATGAAGATGCTGGAGAGATTCCTATGGCTTACGTTGTTAGAAAGCCTGGAAGCAATATCACTGAGGCTCAAGTTATTGATTTCATTGCTAAACAGGCAAGCTTGAGATTGTCTGCTATTTCTCATGTTGCACCGTACAAGAAAATTCGACGAGTTTCGTTTATCGACGCGATCCCGAAATCGCCTGCAGGGAAGATTCTGAGGAGGGAGCTGACCCAACATGCTCGCTCTCATGGTTCTAATAAGCTCTAA 1722 48.14 MADRNPSLNAAHFVDHRSGFCPQTKIFHSLRPPLLIPPLSQPLSVTEHALSLLQSSPPPSNAAVLVDSNSGVHLSYAIFLRQIRTLASNLKALTSLSNGQVAFILAPTSLEVPVLYFALLSLGVVISPANPIGSDSEISHQIRLSKPVIAFATSSTASKLPKLQLGTVLIDSPAFLSMMTEINRSDGLADVKVDQSDSAAILYSSGTTGRVKGVLLSHRNLIVVNSSPNPLLSEVNNGETEPRQVSLCLLPLFHVFGFVMLLRAISRGETLVLMQKFDFVEMLSAVEKFRVTYIPVSPPLVVAMAKSELVAKYDLSSLQVLGCGGAPLGKEVIEKFHQKLPKVEIIQGYGLTESTAGAARSMGPEESSNTKSVGRLSENMEAMIVDPDSGEALPPGHRGELWLRGYVGDAKATTETLHPDGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVLFEMTFESNPLVPPAELEHLLQSNPEIIDAAVIPYPDEDAGEIPMAYVVRKPGSNITEAQVIDFIAKQASLRLSAISHVAPYKKIRRVSFIDAIPKSPAGKILRRELTQHARSHGSNKL 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7690457 7694238 - CmoCh13G008250.1 Cmo13g00825 394880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00825 573 Pfam AMP-binding enzyme 61 449 IPR000873 -
Cmo13g00825 573 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 34 563 - -
Cmo13g00825 573 Pfam AMP-binding enzyme C-terminal domain 470 555 IPR025110 -
Cmo13g00825 573 Gene3D - 445 569 IPR045851 -
Cmo13g00825 573 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Cmo13g00825 573 CDD 4CL 48 561 - -
Cmo13g00825 573 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 34 563 - -
Cmo13g00825 573 SUPERFAMILY Acetyl-CoA synthetase-like 59 567 - -
Cmo13g00825 573 Gene3D - 36 444 IPR042099 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00825 Cmo18g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00825 Cmo-Chr13:7690457 Cmo18g00200 Cmo-Chr18:1339080 0 dispersed
Cmo13g00824 Cmo-Chr13:7689442 Cmo13g00825 Cmo-Chr13:7690457 3.77E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00825 K01904 - csv:101213796 860.907