Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00832 ATGGTTTCAACGAGAAGGAGTGGATCTCTCTCTGGAAGCAACAGCAAAAGATCTTCGTCCTCGGAGGACAAGCCATCGTCACCGAAGCGTCAAAAGGTGGAAAATGGCTGTGGCTCAGAGAAATCGATGCCGGCGGTGGAGAATTCTAAAGAATTATGCACCCCGCCGACTGTGGATCCTGGAGATAATGGACCTGGCGGTGGTCCGATCGCCGGAGTTGACGTTGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTTGCTGTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTGGGGGATAAGCCTAGGAGTTCATTTTCATCTTGGAGTCTCTATGCTGCGAAGCAGAATCCAAATTTTGAGACGACAACTCCTTGGTGTAGACTTCTATCACAGTTCGGTCAGAATCCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACGATTAGCGGGACACTTTGCAAGATCAAGCACACTCAGCGTGAGGGTAGTGCTGTAGCAGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACCGTCAAGAAGAGCTCCAGCTGTGTGCTAAATTCTGGTGACGAAGTGGTCTTTGGTGCTTTGGGGAACCATGCTTATATATTTCAGCAACTTATGAATGAGGTTTCTGTTAAAGGTTTAGATGTTCAAAATGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGTGATCCTTCTGCTGTGGCTGGGGCCTCGATATTGGCATCTCTTTCAAGCCTCAGGCAGGATATATCACGTTGGAAGCCTCCCTCTCAGACCAGCGGTAAAACACACCAAGGTGCTGAACTTCCTTCTAATTCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGCCAACTCAAATCCAGAAGTGCGAAATGACAAAGCTGTAGACTCAAGCACCACTAGCAGGAATCTTCATCCGGGCTCCAATCCAGATGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGATAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACCTCAGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGATGTTCATGCAGGAATTGTTGATGGAAGAGACTTAGAAGTTTCATTTGAGAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTACATACACTTGAAGCATAAAGAACATTCAAAGTACGCCTCAGAATTAAATACAGTGAATCCACGAATTCTACTTTCTGGTCCTGCTGGTTCGGAGATATATCAAGAGATGCTAGCGAAGGCACTTGCCAACTACTACGGAGCAAAGCTACTCATATTTGACAGCCATTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGCTGAAGGATGGAGTTAATGCAGCAAAGTCTTGTAGTTGTTCAAAACAGAGTACTGTATCTACTGAGACCACCAAGAACACAGATCAAATGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTAACCGCCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAAATTTATAGGTTCAGCTTCTGGTGGGATATATCCAGCAACATCTCCCGCAAGGGGCCCACCCAATGGAACTCGCGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCATCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTTATGCAACCGATCTACGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATTCTTATTGATATTTTATTTGAGGCAGTATTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTTGGAAATTTAGATTCCTATTCTACTTTTAAAAGTAGACTGGAAAAGCTTCCCGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCCGGTGGCTTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTGCATGATAGAGGGAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCCAACAAAGTTACAATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGTTAGAACGAGATGCCGAAACTCTTAAAATGAAGGGAAATCTTAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGAATGGATTGTGAAGGTCTAGAGACATTATGCATCAAGGATCAAACACTTACGAATGAGAGTGCAGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAATTCTTTTGTCTTGTGAGAGCATTCAATATGGGATCAGCATCTTACAGGCTATCCTGAATGAATCTAAATGCATGAAGAAGTCACTCAAGGATGTAGTTACGGAGAATGAATTTGAGAAAAGGCTTCTAGCTGACGTTATCCCACCCAGTGATATAGGAGTAACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGTAAGGGACAATTGACAAAGCCATGCAAAGGTATTCTGTTATTTGGTCCACCTGGAACAGGTAAGACGATGCTCGCAAAAGCTGTGGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACATCAAAGTGGTTTGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGCTGGGTCGAAGAGAAAATCCGGGAGAACATGAAGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGATCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCGAACAGAGCAAAGATACTCAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGACTTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGGAGCGTGCTGCAGCTCTCGCGGATGGCAGGCCTGCTCCTGCCCTTAGTGGAAGTGAAGATATTCGGCCTCTAAATATGAACGACTTCAAATATGCTCATGAACGGGTGTGTGCAAGCGTATCATCGGAGTCCGTAAACATGACCGAGCTGCTACAATGGAACGAGCTCTACGGTGAAGGGGGCTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATGAATGGAGCTGATCATAGTTTTGGTCATCCGCGACTCGTGTTTTGTGGCATCGAGTTCTTTCGAGATTGTCCCGGACGTTCGCCACAGTTTGAAGCCACCGGAGAACTACTAGGAAAACCAAATTCCATGGCGGATCTGATTCCACCACCGCATAGATCGACCAACGACTTCTTTTCGGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAATCCTACATATCGGAGCTTCGAACATTTGTCCCATTTGACACCCTCCGATCTCAGCTCCACTCACATCTCTCCGCTCTGAACCGTGAGCTCATTGACTTGATAAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTTGTCGATGTGGAAGCAGCAGTCGTGCGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGCTTCAGTGGAGTTTTCTCTCTCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCTTCGGCCAGAGAGGTCTTAGAATTGTTGCTCGATACGTTTCACGTCGTGTCGAAGGTAGTTGAAAAGCTGATCAAGGAGCTTCCAAGTGCACCTGCTGATGGGTCAAATGGAAATATGAATTTAACAGATAAAAGTGTATCAAGTAATGGTACTTCTTTGCCTCACATGGAGAACGGAACAAATCTTCGAGAAACACAAAGCATGCTCTTGGAAAGAATTTCTAGTGAAATGAACCGACTGAAATTTTACATCGCTCATGCACAGAATCTTCCCTTCATTCAAAATATGGACAAGAGGATTCAGAGTGCCAGCCTGTTGCTGGACACGAGCTTGGGACATTGTTTTGTTGATGGACTTGAACATCGTGATGAAAATGCTATTTACAATTGCCTACGAGCCTATGCTGCCATTGATAACACCACGAGTGCAGAAGAAATTTTTCGCACTACTGTTGTAGCACCATCAGTTCACAAAGTTATTCCACATGGTGTTTCTGGCATGGATGCTGGATCATCTGATGACGATTTGGAGAATGATTACAAGCAAATGAAGCAATATATTGATAAAGAATGCAAATTTTTGTTAGAAATATCTGCTACAGAAAACTCAGGACTACATGTATTTGATTTCTTGGCTAATTCAATCCTGAAAGAGGTTCTCTCAGCTATCCAAAAGGCAAAACCAGGTGCATTTTCCCCAGGAAGACCTACTGAATTCTTAAAGAACTACAAATCGAGCCTTGATTTCTTGGCATACTTGGAAGGCTATTGTCCATCAAGATCTGCTGTTGCTAAATTTCGAGCTGCAGCTGTGTATAATGAGTTCATGAAGCAATGGAATACTGGGGTTTATTTTTCTCTTAGGTTTCAGGAAATAGCTGGGGCTTTGGATTCGTCCCTTTCAGCACCCAGTCTAACCCCCGTTCAAACTTCATCTTCTGGCCAGGGAGATACTCAGGATCTAACGTTAAAGCAGAGTGTAGTGCTTTTAGACTGCCTGACAGCATGCTGGAGAGAGGACGTTCTCGTCCTTTCTTGTTCTGACAAGTTTCTTCGTCTTTCTTTGCAGCTCCTTTCAAGGCGAGTATACTCTAATTGGTTGTCATCTGGTCTAGCTTCCCGTAAGACGGGTACAGGCTCCAATCCAGGTTCTGAATGGGCCGTAGCAGCTGCCCCAGATGATTTAATATATATAATCCATGACCTTGGTCGTCTTGCAACGGTGGTAGCTGGTGAATTCCTGGAAACTGTACTTCAGCTCCTGTCATCATGCACTGCGGATGTTCTTGATTCGATAAAGCAGAGCATTTTGCACAGTGGAAAGTCATTGAATAATTTAATGCCCGAAGTTATTGGTGCCATAGTTACTTCACTGGTTGAGAGGTCTGTTGAGGACTTGAGACAGCTGAAGGGTATAACAGCAACATACAGGATGACCAATAAACCACTGCCTGTAAGGCATTCGCCCTATGTATCAGGGCTGCTACGCCCCCTGAAGGCCTTATTGGACGGAGAGAAAGCGGCAACCTTCTTGACAGCGGAAGCAAGGAATACCCTGCTGATCGGTGCTGTGACAGAGATTACGGCACGTTATTACGAACTGGCAGCTGATCTTGTTAGCTTGGCTAGGAAAACAGATTCGTCACTCCAGAAAATCCGGCAGGAAGTACAGAGACGAGCTGGAGCAAGCTCAGATGTTTCAGACCATAACATCTCTGACACCGACAAGATTTGCATGCAACTCTTTCTTGATATTCAGGAGTATGGTCGCAACCTGTCAGCCCTTGGGGTTGAAGCGGCGAGCATTCTCACATACCGTTCATTTTGGCAGTGTGTTGCACCTCCAGATAGGCAAAACTCCATCAATTTCTGA 6069 44.06 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPAVENSKELCTPPTVDPGDNGPGGGPIAGVDVGEGVSSLKEDAAPAAVAVTTPIAEGTSLVGDKPRSSFSSWSLYAAKQNPNFETTTPWCRLLSQFGQNPNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSAVAVLESTGGKGSVMVNGLTVKKSSSCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQNGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSGKTHQGAELPSNSVVHDAMELEIDALEANSNPEVRNDKAVDSSTTSRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEDRNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFENFPYYLSENTKNVLIAASYIHLKHKEHSKYASELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGVNAAKSCSCSKQSTVSTETTKNTDQMTGEEDTPSSSNATLTAPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVKFIGSASGGIYPATSPARGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCYATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRILLSCESIQYGISILQAILNESKCMKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDFDFDSVASMTDGYSGSDLKERAAALADGRPAPALSGSEDIRPLNMNDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFMNGADHSFGHPRLVFCGIEFFRDCPGRSPQFEATGELLGKPNSMADLIPPPHRSTNDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVEKLIKELPSAPADGSNGNMNLTDKSVSSNGTSLPHMENGTNLRETQSMLLERISSEMNRLKFYIAHAQNLPFIQNMDKRIQSASLLLDTSLGHCFVDGLEHRDENAIYNCLRAYAAIDNTTSAEEIFRTTVVAPSVHKVIPHGVSGMDAGSSDDDLENDYKQMKQYIDKECKFLLEISATENSGLHVFDFLANSILKEVLSAIQKAKPGAFSPGRPTEFLKNYKSSLDFLAYLEGYCPSRSAVAKFRAAAVYNEFMKQWNTGVYFSLRFQEIAGALDSSLSAPSLTPVQTSSSGQGDTQDLTLKQSVVLLDCLTACWREDVLVLSCSDKFLRLSLQLLSRRVYSNWLSSGLASRKTGTGSNPGSEWAVAAAPDDLIYIIHDLGRLATVVAGEFLETVLQLLSSCTADVLDSIKQSILHSGKSLNNLMPEVIGAIVTSLVERSVEDLRQLKGITATYRMTNKPLPVRHSPYVSGLLRPLKALLDGEKAATFLTAEARNTLLIGAVTEITARYYELAADLVSLARKTDSSLQKIRQEVQRRAGASSDVSDHNISDTDKICMQLFLDIQEYGRNLSALGVEAASILTYRSFWQCVAPPDRQNSINF 2022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7722307 7743891 - CmoCh13G008320.1 Cmo13g00832 394887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 282 301 - -
Cmo13g00832 2022 Gene3D - 1111 1185 - -
Cmo13g00832 2022 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 387 1223 - -
Cmo13g00832 2022 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 362 - -
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 317 347 - -
Cmo13g00832 2022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1188 IPR027417 -
Cmo13g00832 2022 Pfam ATPase family associated with various cellular activities (AAA) 979 1108 IPR003959 GO:0005524|GO:0016887
Cmo13g00832 2022 ProSitePatterns AAA-protein family signature. 1082 1101 IPR003960 GO:0005524|GO:0016887
Cmo13g00832 2022 CDD FHA 149 232 IPR000253 GO:0005515
Cmo13g00832 2022 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 537 583 - -
Cmo13g00832 2022 Pfam COG (conserved oligomeric Golgi) complex component, COG2 1290 1418 IPR024602 -
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 282 302 - -
Cmo13g00832 2022 Gene3D - 937 1198 IPR027417 -
Cmo13g00832 2022 Pfam FHA domain 153 222 IPR000253 GO:0005515
Cmo13g00832 2022 Gene3D - 131 240 - -
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 1 21 - -
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 326 343 - -
Cmo13g00832 2022 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 387 1223 - -
Cmo13g00832 2022 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 362 - -
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 1 76 - -
Cmo13g00832 2022 MobiDBLite consensus disorder prediction 22 36 - -
Cmo13g00832 2022 Pfam COG complex component, COG2, C-terminal 1856 1984 IPR024603 -
Cmo13g00832 2022 CDD AAA 977 1110 - -
Cmo13g00832 2022 SMART AAA_5 975 1112 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00832 - - - csv:101214766 2216.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00410 Cmo-Chr8:2520531 Cmo13g00832 Cmo-Chr13:7722307 0 dispersed
Cmo13g00832 Cmo-Chr13:7722307 Cmo17g01074 Cmo-Chr17:8925776 0 dispersed
Cmo08g00491 Cmo-Chr8:3024542 Cmo13g00832 Cmo-Chr13:7722307 1.40E-154 transposed
Cmo13g00832 Cmo-Chr13:7722307 Cmo18g00213 Cmo-Chr18:1389641 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00832 Cmo_Chr13 FPKM 13.328473 12.277984 27.176655 30.922451 16.182232 13.20054 15.972088 24.271074 23.630913 22.237999