Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00833 ATGGCGGTTTCATTGAGCGATGTCAAGTCGGAAGCCGGTCTAAAAAAACTCGACGACTACTTGCTCAGTCGTAGCTACATTTCTGGGTATCAAGCTTCGAAGGATGATATTGCTGTTTACGAAGCTCTATCCAAACCCGTTTCCAGCGACTATGTCAACGTATCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTCTCTGCTGTTTTTGGAGAGGGTTCCGGCGTTAAGTTCGATTCTGCAGAAGCAATTGCAACTCCACCAGCTGCTGATGCAAAGGCTAGCGGTGCTGACGACGACGACGACGATATGGATCTATTTGGCGAAGAGACTGAAGAGGAAAAGAAGGCCGCTGAGGAGCGTGCAGCTTCCATAAAGGCTTCATCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGATATCAAACCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATCAAGAAACTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCCGTTGACACTCTCATTGAAGAATATTTGACAGCTGAACCCATAAACGAGTATGTCCAGAGCTGTGATATCGTTGCCTTCAACAAAATCTATCTTAAATAA 690 45.22 MAVSLSDVKSEAGLKKLDDYLLSRSYISGYQASKDDIAVYEALSKPVSSDYVNVSRWSNHIEALLRVSAVFGEGSGVKFDSAEAIATPPAADAKASGADDDDDDMDLFGEETEEEKKAAEERAASIKASSKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEYLTAEPINEYVQSCDIVAFNKIYLK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7745294 7747562 + CmoCh13G008330.1 Cmo13g00833 394888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00833 229 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 101 109 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cmo13g00833 229 SUPERFAMILY eEF-1beta-like 134 226 IPR036219 -
Cmo13g00833 229 Gene3D - 130 226 IPR014717 -
Cmo13g00833 229 MobiDBLite consensus disorder prediction 111 131 - -
Cmo13g00833 229 Pfam EF-1 guanine nucleotide exchange domain 139 226 IPR014038 GO:0003746|GO:0006414
Cmo13g00833 229 SMART EF1_GNE_2 137 226 IPR014038 GO:0003746|GO:0006414
Cmo13g00833 229 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 227 - -
Cmo13g00833 229 Gene3D - 2 75 - -
Cmo13g00833 229 CDD EF1B 140 226 IPR014038 GO:0003746|GO:0006414
Cmo13g00833 229 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 215 226 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cmo13g00833 229 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
Cmo13g00833 229 Coils Coil 109 129 - -
Cmo13g00833 229 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 227 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00833 Cmo18g00213 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00833 Cmo-Chr13:7745294 Cmo18g00211 Cmo-Chr18:1388069 4.33E-122 dispersed
Cmo13g00833 Cmo-Chr13:7745294 Cmo18g00213 Cmo-Chr18:1389641 5.78E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00833 K03232 - csv:101215489 325.479