Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00835 ATGGCGACGACGACCACAAGTATTGGCGGCGGCGGCGGCGGCGGTGGTGGTGGGGAGGATAGAGTTATGGCTACTGCTCAGCAGATTGTTAAGAGCCTCAATACACCCAAGGAGGTTCAAGAAGACATGCTTTTGATCTTCTCTAGTTTTGACAATCGTCTTTCTAATATCTCCAGTTTGGTCAACAGTGGAGATTCGAAGAGGGAAGGGGATCGGTATGAAGCTTCTGAGAAGCTGATTCTTCGTTGGGATTCTGGTCCTGGAGCTTCTCGGAACTCCCTTAATTGGGAGGATTCGCCGGAGGAGGCGGTTGAGTACTTATCGGCGGTGGATGATATCATTCAGTGGATCGATGAGTTGTCAATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTTCGTCATATGTTGATTCGGAACACTGTCCCTCTCGATGCTGAGCATCTCTACGGTTCAATTCGGAAGGTTTCGCTCTCTTTTGCTTCACACGACAGCGAAAATTCCGATGAGTTTGAGTCGTTTGCCGATGTTGACCGTGGTTCTGGAATCTTTCATGAGCGTGGTGTCAGTTTGGGCGATGATTTGCGAGTCGATTTGATCAATCCTGACGCTGTCGTTGATTTGAAAGAGATCGCCGACCGGATGATTCGGTCTGGTTACGAAAAAGAGTGTCTCAACGTGTATACTGGTGTCCGACGCGATGCTCTTGATGAATGCTTGGTGGTTCTTGGAGTTGAGAAGCTAAGTATTGAGGATGTCCAGAAAATTGATTGGAAGATCTTGGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGTGTCCGAGTCCTTTTGACGGGCGAGAAGCGACTGTGTGACTATATCTTCAGCGGGTCCGATGACTCCGAGGAAGTCTGCTTCAATGAGACTGCTAAAGGGTGCATCAGGCAGTTACTGAATTTTGCAGAGGCCATTGCCATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAATACGTTCTGCCGGACTTGCAGGCTATGATCACTGATGAATTTGTGATTGAGGAGGCGCAAGGAGTGCTTTCTAGGCTGGGAGAGGCCGCTAAAGGTACATTTGTTGAGTTCGAGAATGCTGTTCGGAACGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTTGATGCACTTTTAGAAGGCGACGACGAAGATTTGCATCACCTAGGGGGTGATGGTGCTGAAAATTTGGAGTTGGAAACTATGTCGCCATTGCCTCATCGGCTGTTTTCATTGTTATCATCACTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGCGATGATTCGATTCAATATATATTTCTCATGAACAATATACAATACATTGTGCAGAAAGCAAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGTAAGCGCCGAGGCCAGGTTCGCATATATGCGACGAACTATCTTAGGGCGTCTTGGGGTAAATTATTAACTTTCTTGAAGGAAGAAGGCACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTGAAGGAAAAGTTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAATTCAGACAGGTTGGAAGGTTGCCGATGCTCAACTACGAGAGGAGCTCCGAATTTCAGTATCGGCAAAAGCGCTACCTGCATATCGTGCCTTCTTGGGAAGGCATGGAAGTCAGTTAGAGAATACAAGACATGCTGGGAGGTATATAAAGTACACATCGGATGACTTGGAGAACTATTTATTGGATTTGTTTGAAGGATCACCACAAGTTATACACAACTTAAGAAGAAAAAGTAGTTCATAG 1980 45.81 MATTTTSIGGGGGGGGGGEDRVMATAQQIVKSLNTPKEVQEDMLLIFSSFDNRLSNISSLVNSGDSKREGDRYEASEKLILRWDSGPGASRNSLNWEDSPEEAVEYLSAVDDIIQWIDELSIRSDSAEIVDRAENAIQIAMSRLEDEFRHMLIRNTVPLDAEHLYGSIRKVSLSFASHDSENSDEFESFADVDRGSGIFHERGVSLGDDLRVDLINPDAVVDLKEIADRMIRSGYEKECLNVYTGVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVLPDLQAMITDEFVIEEAQGVLSRLGEAAKGTFVEFENAVRNETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDALLEGDDEDLHHLGGDGAENLELETMSPLPHRLFSLLSSLETNLERKSKLYGDDSIQYIFLMNNIQYIVQKAKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLTFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRIQTGWKVADAQLREELRISVSAKALPAYRAFLGRHGSQLENTRHAGRYIKYTSDDLENYLLDLFEGSPQVIHNLRRKSSS 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7754168 7756147 - CmoCh13G008350.1 Cmo13g00835 394890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00835 659 Gene3D Exocyst complex component Exo70 92 651 - -
Cmo13g00835 659 SUPERFAMILY Cullin repeat-like 92 644 IPR016159 -
Cmo13g00835 659 PANTHER EXOCYST COMPLEX PROTEIN EXO70 54 657 IPR004140 GO:0000145|GO:0006887
Cmo13g00835 659 MobiDBLite consensus disorder prediction 1 20 - -
Cmo13g00835 659 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 54 657 - -
Cmo13g00835 659 Pfam Exo70 exocyst complex subunit 281 640 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00835 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212753 1167.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00037 Cmo13g00835 CCT
Cmo10g00061 Cmo13g00835 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00011 Cmo-Chr1:36167 Cmo13g00835 Cmo-Chr13:7754168 5.05E-148 dispersed
Cmo01g00735 Cmo-Chr1:3794549 Cmo13g00835 Cmo-Chr13:7754168 1.28E-122 dispersed
Cmo13g00020 Cmo-Chr13:176737 Cmo13g00835 Cmo-Chr13:7754168 6.93E-124 dispersed
Cmo13g00835 Cmo-Chr13:7754168 Cmo14g01223 Cmo-Chr14:10395134 1.06E-153 dispersed
Cmo15g00783 Cmo-Chr15:3851042 Cmo13g00835 Cmo-Chr13:7754168 8.57E-111 dispersed
Cmo01g00483 Cmo-Chr1:2299830 Cmo13g00835 Cmo-Chr13:7754168 2.28E-141 transposed
Cmo13g01120 Cmo-Chr13:9132537 Cmo13g00835 Cmo-Chr13:7754168 4.42E-127 transposed
Cmo10g00061 Cmo-Chr10:282379 Cmo13g00835 Cmo-Chr13:7754168 0 wgd
Cmo11g00037 Cmo-Chr11:157117 Cmo13g00835 Cmo-Chr13:7754168 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00956 . 10 653 EXO70 exocyst subunit family AT5G03540 76.6 1.2e-285 979.5
Cmo04g01515 . 10 651 EXO70 exocyst subunit family AT5G03540 74.9 2.0e-277 952.2
Cmo03g01110 CST 1 636 EXO70 exocyst subunit family AT5G03540 68.5 4.1e-254 874.8
Cmo07g00855 CST 95 737 EXO70 exocyst subunit family AT5G03540 58.1 5.6e-195 678.3
Cmo03g01110 CST 1 636 EXO70 exocyst subunit family AT5G52340 76.3 2.3e-283 971.8
Cmo18g00956 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 1.3e-270 929.5
Cmo04g01515 . 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.9e-269 925.6
Cmo07g00855 CST 94 737 EXO70 exocyst subunit family AT5G52340 61.0 1.6e-212 736.5
Cmo03g01110 CST 145 629 EXO70 exocyst subunit family AT5G52350 61.9 7.9e-169 591.3
Cmo04g01515 . 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.8e-166 582.0
Cmo18g00956 . 147 653 EXO70 exocyst subunit family AT5G52350 59.1 4.8e-166 582.0
Cmo13g00020 . 1 626 EXO70 exocyst subunit family AT5G58430 65.3 1.8e-240 829.3
Cmo01g00735 . 1 624 EXO70 exocyst subunit family AT5G58430 65.4 5.4e-240 827.8
Cmo13g00020 . 1 625 EXO70 exocyst subunit family AT1G07000 51.9 6.4e-174 608.2
Cmo01g00735 . 1 623 EXO70 exocyst subunit family AT1G07000 51.3 2.7e-172 602.8
Cmo06g01668 . 58 671 EXO70 exocyst subunit family AT5G13150 51.7 5.7e-168 588.6
Cmo14g01484 . 61 675 EXO70 exocyst subunit family AT5G13150 50.3 8.3e-167 584.7
Cmo04g02383 . 77 673 EXO70 exocyst subunit family AT5G13990 54.3 1.4e-185 647.1
Cmo15g00783 . 92 698 EXO70 exocyst subunit family AT5G13990 53.1 1.0e-183 641.0
Cmo14g01223 CCT,ECH 12 611 EXO70 exocyst subunit family AT1G72470 64.1 1.9e-213 739.6
Cmo01g00011 . 12 596 EXO70 exocyst subunit family AT1G72470 61.7 3.9e-198 688.7
Cmo14g01223 CCT,ECH 12 609 EXO70 exocyst subunit family AT1G54090 62.1 3.2e-208 722.2
Cmo01g00011 . 9 595 EXO70 exocyst subunit family AT1G54090 59.2 4.9e-193 671.8
Cmo14g01223 CCT,ECH 9 610 EXO70 exocyst subunit family AT3G14090 63.4 2.9e-217 752.3
Cmo01g00011 . 9 595 EXO70 exocyst subunit family AT3G14090 60.5 1.1e-200 697.2
Cmo11g00037 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 63.0 3.3e-227 785.4
Cmo10g00061 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 62.2 2.8e-226 782.3
Cmo13g00835 CCT 19 657 EXO70 exocyst subunit family AT5G50380 62.1 6.3e-226 781.2
Cmo05g00650 . 15 684 EXO70 exocyst subunit family AT4G31540 73.3 1.5e-291 999.2
Cmo12g00250 CST 15 682 EXO70 exocyst subunit family AT4G31540 73.1 1.9e-291 998.8
Cmo04g01289 . 40 587 EXO70 exocyst subunit family AT3G55150 51.1 2.2e-148 523.5
Cmo20g00472 CST 471 976 EXO70 exocyst subunit family AT3G55150 50.2 6.7e-129 458.8
Cmo04g00251 . 27 602 EXO70 exocyst subunit family AT2G39380 50.3 1.4e-150 530.8
Cmo04g01289 . 42 587 EXO70 exocyst subunit family AT2G39380 52.2 2.6e-149 526.6
Cmo14g00163 . 26 630 EXO70 exocyst subunit family AT3G09520 55.5 2.4e-179 626.3
Cmo20g00472 CST 1 460 EXO70 exocyst subunit family AT3G09520 50.5 2.8e-127 453.4
Cmo20g00472 CST 473 978 EXO70 exocyst subunit family AT5G59730 51.5 9.2e-139 491.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00835 Cmo_Chr13 FPKM 2.889378 3.435646 0.080242 0.0 0.0 0.0 0.0 0.062213 0.087461 0.235512