Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00858 | ATGGCAGCCTTTTCATATCAATACCAACCGGTTCTTCTCGACTCCATGTTCTTCCCCAACAATTCCTACAAAATGGGAGGCTTTTTGGATGACCCAAATTTCAACACCAATTGCTTCTTACAATTTCAAGAACAACAACAACAACAACAACCCATTTACCATTTCCCCGACATCTCCAATCAAACCCCTGAATCTTCCACTTTGGTGGACAGATCCGACAGCGCCGACCCGCCGGCTGTCACTGTCACCGTCACTTCCCCTTGTAGTAAGAAAAGGAAGAGCCGGAATACTTCCTCCGCCACCTCCGCCCAATCCAAGGGCACTACAGAGAGCACCGGAAAGAAGCAGAAAAGTAAAGGCGAATTAGATGAACATAAAGAAGGAGATCCAAAGCCCAAAAATGGGAAGAAAGAGGAGAAAAAAGTCTCAGACGGTGCAGCAACTAAAGGCTACATTCACGTCAGAGCTCGAAGGGGCCAAGCCACTGACAGCCACAGTCTCGCCGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGACTTGTTCCTGGTTGCGACAAGGTTACAGGGAAGGCCCTGATGTTGGATGAAATTATAAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGATTTGGACGGCCTTATGATTCAACCAGAGGTAAAGAACAAAACCCATAAAATGGAATTTGAAAAAGCTTCAATCTTTGTGGACTTTACGCCGTCGTTGAGTACTATAACGCCACAGCTTCCGGCGATGGCTCAATGCAGCGGAGCGGTGATCGACACCACCCCTCCGACCACCCCAACTCCGGCAATCTCCGCCGCAAATAACTATCCCTTAATGGACCCTTCAGCTAATAATATGTTTCTAATGAGCCCCTCCGCCTACTCCCCTTCATCTCAGGATTACGTTAAGGTTTCATCATGGGATGTCGAAGAACAGAAACGAAAGCTTCTAATTTCATCGGGAATCGGCGACAACTTGTGTTACTTCCATTGA | 1071 | 46.31 | MAAFSYQYQPVLLDSMFFPNNSYKMGGFLDDPNFNTNCFLQFQEQQQQQQPIYHFPDISNQTPESSTLVDRSDSADPPAVTVTVTSPCSKKRKSRNTSSATSAQSKGTTESTGKKQKSKGELDEHKEGDPKPKNGKKEEKKVSDGAATKGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPEVKNKTHKMEFEKASIFVDFTPSLSTITPQLPAMAQCSGAVIDTTPPTTPTPAISAANNYPLMDPSANNMFLMSPSAYSPSSQDYVKVSSWDVEEQKRKLLISSGIGDNLCYFH | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7861441 | 7864216 | - | CmoCh13G008580.1 | Cmo13g00858 | 394913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00858 | 356 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 158 | 226 | IPR036638 | GO:0046983 | |
Cmo13g00858 | 356 | MobiDBLite | consensus disorder prediction | 56 | 168 | - | - | |
Cmo13g00858 | 356 | Gene3D | - | 157 | 227 | IPR036638 | GO:0046983 | |
Cmo13g00858 | 356 | CDD | bHLH_AtBPE_like | 150 | 235 | - | - | |
Cmo13g00858 | 356 | Pfam | Helix-loop-helix DNA-binding domain | 164 | 211 | IPR011598 | GO:0046983 | |
Cmo13g00858 | 356 | SMART | finulus | 166 | 216 | IPR011598 | GO:0046983 | |
Cmo13g00858 | 356 | MobiDBLite | consensus disorder prediction | 56 | 111 | - | - | |
Cmo13g00858 | 356 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 160 | 210 | IPR011598 | GO:0046983 | |
Cmo13g00858 | 356 | MobiDBLite | consensus disorder prediction | 112 | 146 | - | - | |
Cmo13g00858 | 356 | PANTHER | BASIC HELIX LOOP HELIX PROTEIN BHLH8 | 1 | 356 | - | - | |
Cmo13g00858 | 356 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 356 | IPR024097 | GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00026 | Cmo13g00858 | CCT | |
Cmo13g00858 | Cmo18g00237 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g00858 | Cmo-Chr13:7861441 | Cmo08g00241 | Cmo-Chr8:1463780 | 7.41E-44 | dispersed | |
Cmo10g00026 | Cmo-Chr10:144859 | Cmo13g00858 | Cmo-Chr13:7861441 | 3.97E-44 | wgd | |
Cmo13g00858 | Cmo-Chr13:7861441 | Cmo18g00237 | Cmo-Chr18:1559926 | 3.12E-154 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10854 | PF00010 | HLH | 7.00E-07 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00858 | - | - | cmax:111495225 | 565.459 |