Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00858 ATGGCAGCCTTTTCATATCAATACCAACCGGTTCTTCTCGACTCCATGTTCTTCCCCAACAATTCCTACAAAATGGGAGGCTTTTTGGATGACCCAAATTTCAACACCAATTGCTTCTTACAATTTCAAGAACAACAACAACAACAACAACCCATTTACCATTTCCCCGACATCTCCAATCAAACCCCTGAATCTTCCACTTTGGTGGACAGATCCGACAGCGCCGACCCGCCGGCTGTCACTGTCACCGTCACTTCCCCTTGTAGTAAGAAAAGGAAGAGCCGGAATACTTCCTCCGCCACCTCCGCCCAATCCAAGGGCACTACAGAGAGCACCGGAAAGAAGCAGAAAAGTAAAGGCGAATTAGATGAACATAAAGAAGGAGATCCAAAGCCCAAAAATGGGAAGAAAGAGGAGAAAAAAGTCTCAGACGGTGCAGCAACTAAAGGCTACATTCACGTCAGAGCTCGAAGGGGCCAAGCCACTGACAGCCACAGTCTCGCCGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGACTTGTTCCTGGTTGCGACAAGGTTACAGGGAAGGCCCTGATGTTGGATGAAATTATAAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGATTTGGACGGCCTTATGATTCAACCAGAGGTAAAGAACAAAACCCATAAAATGGAATTTGAAAAAGCTTCAATCTTTGTGGACTTTACGCCGTCGTTGAGTACTATAACGCCACAGCTTCCGGCGATGGCTCAATGCAGCGGAGCGGTGATCGACACCACCCCTCCGACCACCCCAACTCCGGCAATCTCCGCCGCAAATAACTATCCCTTAATGGACCCTTCAGCTAATAATATGTTTCTAATGAGCCCCTCCGCCTACTCCCCTTCATCTCAGGATTACGTTAAGGTTTCATCATGGGATGTCGAAGAACAGAAACGAAAGCTTCTAATTTCATCGGGAATCGGCGACAACTTGTGTTACTTCCATTGA 1071 46.31 MAAFSYQYQPVLLDSMFFPNNSYKMGGFLDDPNFNTNCFLQFQEQQQQQQPIYHFPDISNQTPESSTLVDRSDSADPPAVTVTVTSPCSKKRKSRNTSSATSAQSKGTTESTGKKQKSKGELDEHKEGDPKPKNGKKEEKKVSDGAATKGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPEVKNKTHKMEFEKASIFVDFTPSLSTITPQLPAMAQCSGAVIDTTPPTTPTPAISAANNYPLMDPSANNMFLMSPSAYSPSSQDYVKVSSWDVEEQKRKLLISSGIGDNLCYFH 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7861441 7864216 - CmoCh13G008580.1 Cmo13g00858 394913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00858 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 226 IPR036638 GO:0046983
Cmo13g00858 356 MobiDBLite consensus disorder prediction 56 168 - -
Cmo13g00858 356 Gene3D - 157 227 IPR036638 GO:0046983
Cmo13g00858 356 CDD bHLH_AtBPE_like 150 235 - -
Cmo13g00858 356 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Cmo13g00858 356 SMART finulus 166 216 IPR011598 GO:0046983
Cmo13g00858 356 MobiDBLite consensus disorder prediction 56 111 - -
Cmo13g00858 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Cmo13g00858 356 MobiDBLite consensus disorder prediction 112 146 - -
Cmo13g00858 356 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 356 - -
Cmo13g00858 356 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 356 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00026 Cmo13g00858 CCT
Cmo13g00858 Cmo18g00237 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00858 Cmo-Chr13:7861441 Cmo08g00241 Cmo-Chr8:1463780 7.41E-44 dispersed
Cmo10g00026 Cmo-Chr10:144859 Cmo13g00858 Cmo-Chr13:7861441 3.97E-44 wgd
Cmo13g00858 Cmo-Chr13:7861441 Cmo18g00237 Cmo-Chr18:1559926 3.12E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10854 PF00010 HLH 7.00E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00858 - - cmax:111495225 565.459