Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00860 ATGGATCGGAGGAGACCTGCTAGTCCAGTCTACGCCAGGCAGTGGAGTGGCGGCTCGAGCAGCACAGGATCGTCCTCTCCTGCCATGTCGCCGGCTCATCCTCAGTCTCGATTGGGTACGTCTTCCACCATTAAGCGCGCTCAGAATGTTGCTGCCAAGAAAGCTGCTGAACGTTTGGCTCAGGTCATGGCGCAGACCCCTGAGGACGATGATGAAGACGATGATCTCAACTTTCGATTCGCTGCCCCACCTCCTCCTCGTGACTGGTTGACGTCAATTCTTGTGATACTTTATCTGTTTCATTGTGGATTGGTAGTTGAATTTAGCTTTTCTAGTCTCTACTTTCTTTTATCATGCCTTTTAAGATCTGTGCACTTGCAGCATGGCATGTGTTCATTTGTCTTGGATACAGTAGAGATTGTGATCAATCCCGCGCGGAGCATTTCCCGCGGTCGGAATTTCGTAGAGCATGTTCCTCAAGTTCGATCCACATCAGCTGGTAGATCATCGATGTCCGTGCGTTCCACACAGATCGTACCACCGAGTAAATCATCACTCAGAACTCCAGTCTCTATACCTCCAATTGAACCTCCTTCTAATAGGAATTCAGATAGAAGGTTTACACCAGATATCGGACAGGTGAACTCCAAAGATGCAGGAGATCAGCGGGAAGCTTCTGCACTACGTGATGAGCTTGATATGCTTCAAGAAGAGAATGAGAATTTACTCGAAAAGCTTCGACTAGCAGAAGATAAACGGGAAGAAGTGGAGGCTAGAGCTAGAATGCTTGAGAAGCAGGTTGCTACTCTTGGAGAGGGTGTATCCTTGGAAGCTAAGTTATTGAGCAGGAAAGAAGCAGCCCTGCGTCAAAGAGAGGCTGCACTCAAAGCTGCAAAACCAACCAACGATAGTAGAAATGAAGAAATTGCTGCTCTTCGTTCAGAAATTGAGAACTTAAAAGATGAGTCATCAGCTGCTACAGAACAGCTCCGAGAAGCAGAGTCTGAAGCAAAGGCTCTACGTGTAATGACACAGAGAATGATTTTGACACAAGAAGAGATGGAGGAGGTTGTTTTGAAGAGGTGTTGGCTTGCTCGCTATTGGGGCTTAGCTGTTCAATATGACTTCTTTTCGGCCAGATGTTTGGGCGTATGTGCGGATATAGCAATCTCAAAACATGAGTATTGGTCTTCTTTAGCTCCTTTGCCATTCGAAGTTGTTATTTCTGCAGGACAGAAGGCCAAGGAGGAGCCTGAAGGTCGAAATGATCAAGATAGGAGTAAGCTCATCCAGGACTTAAATGATCTCTCCGGGGAAGGAAATATTGAGAGTATGCTTTCAGTTGAAATGGGATTGAGAGAATTAACATCTCTAAAGGTTGAAGATGCAACTGTACTTGCATTGGCGCAACATAGGCGTCCAAGTTTGGTTCATCAATCTGGTAGTTTTTTTCCCCAATTAGTGCATAGGTTTGTTCACTTTTTCGTGTCGATCTTTCAATGGATGGATTACTGCTTATTGACTAAGCAAATCTTTTTAGAATCAGGACTTCGAGAATTATTTCAAAGCTTAAAGAATTCAAAAGCGTCTGCTGATCCGAAGTTTTCTGAGGCTTTTGGTAAGTTGATTACTGACACGGTTGTAAGGAGCCGATGTACGAAAAATTTCTCCAAGTGTAGGAAGTTGTCAATTTTTGAAGCTTGGCTTACATACTTTTGGAGAAGAGCCAAGGCATATGGTGTGGATGAGGATGTTGCAGATGAGCGCCTCCAGTTTTGGATCAGTCGTAGTGGGCAGCCTCCGACTTCACATGATGCTGTGGATGTTGAACGAGGTCTTGTAGAGCTCAGAAAACTTGGAATAGAACAACAGCTTTGGGAGGCATCTAGAAAGGAAATCGATCAATCTTCTGCATTCGCACTCACTGACCCTCCTCAAATTTTGAATCCCCTTCTGCCTACTAACGTACTTCCAAGTCCTCAGATTATCTCTTTCTGTCAGCTTCCCACCATTTCTTTTCCCGTTCCCAAGAAACTCCTTCGAAACCACTCCACCCCTCATCATCATCATCATCATCATCATCTCATCATGCTTTCCAGAGCTGGGAACGTCCTGTGGATGGAAGAAGATAGCAAGGAAGAAGACTCTGCTTCCTGGACCAAAAACAACACCGACACCCATCTCACCCACCCTGCTAATTCCTCTGTTTTCGACAACAACCACCAAATCACCTCTCTCTCTACCTTCAAATCCATGCTCGACGTTGAAGACGACTGGTGCATCAATGACAATGCCCTCCATAACCATACCCACCACGCCGACATCAACGACATTACCTTCTCCCAGAATTTCACCGACCCACCTGACAATTTGTTGCTCCCCTCTGCAGATTCCTCCTCTTCTTGCTCCCCTTCTTCCTCTGTCTTCAATAACATCGACCCATCTCAATTGCGCTTCTTTTTACCCCCAACCCGCACTTTCTCTTCACTCCACAAACCCATTTCTAACAACCCTTTAGACCATCCCTTCGATTTGGGCGCAGAGTTTGGGTTTCTTGACGTCCAAGCTTCAAATTCTTCCACTCTGCTCAATAATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAAATGAACACTCCTAATTTGTGCTTAGCCTCTCAATTGACAGAGAATTGTTCGGGTTTAGCTGGATTTCAGAGTTTCGATGACAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGCGACCACTTGAATCCTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGTTTAGCTGATAAGGGAAGCAATTTGGGGGGTCTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGATGGGGGCGTTGGCAAAAATGAGATCGGTGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCGGATGAGTTTCAAGATACCAGCATCGACACATCCCGTTTCAACTACGATTCTGATGATTTTACTGAGCATAATAACAGTAAGTTGGATGAGAGCGGTAGAAATGTCGGAAATACATCAAACGCCAATAGTACGGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCAGCGAAGAATTTGATGGCTGAGAGGCGTCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCTGTTGTTCCCAAAATTAGCAAAATGGACAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAACTAGAATTTGCTCCTCCCGGGACGGCCTTGACGCCGAGCACAAGCTTTCATCCCCTAACTCCGACTCCGTCGAGCCTCTCGAGTCGTATAAAGGAGGAGCTATGTCCTAGTTCATTTCCCAGCCCAAATGCCCAACAACCTGCAAGGGTCGAAGTTCGGGTACGAGAAGGACGGGCGGTAAATATACACATGTTTTGCAGTCGTCGTCCTGGTCTCTTGCTCTCCACAGTTAGAGCATTAGATAATCTTGGATTAGACATCCAACAAGCTGTGATCAGCTGCTTTAATGGTTTTGCCATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGAGCATGATGTCCATCCGGAGCAGATAAAAGCAATACTATTAGATTCAGTCGGGTTGAATGACAATCGCGTCCCTGGTTCTACGGCTGCGATCGTAGGGATTCCGGAAAAGAGCGCTAAAACAAAAGCAGCCCATCGGAAGCTCGGAATCCCGAAGAACGGAGAAATTCTGCAATTCATATTACCAACATCATTGGAGGTGAAGAACATGGCGGGGCCTGTGGAAGAGACCGACGGAACCAACAGCAAGGAAGAGCAAGAAGAGGCTTTGGTCGCTTTGATCGATCATCGTTGCCGTGAAGTTCAAAATCTCAAGCAGCGTATCTCCTACTATACTTCACAGGTCTCCCTTCTTTCTTATTATTCACTTCTTTTCCTTGAAGAAGCGGAGAAGAGATTACATGATTCAGAATCGAAATTGGCCCGGCTTCGACGTCAGGGCAATGCAGTGTCATCCAAAGATTCTTTTAGAAGTAGAGCCGTAAGTGTGAAAGTGGAGCAAACGGTAAATGAAGGTAGCAAGCCCCAGCCATATCCGAAACCAGAGCTTGTAATTCCGGCTGTTGTTCCAAAGATTTCCCAGAACAGTGCATTGGCTGGGAATGGAGCGAAGATTTCAAATAGCTCCAGCTCCAGGGCTCAATCAAGTCCTTCTCATGTTAAGAATGTAATTAAAGTTGAAGGGGACAAAAGTACTGGAAACTCTTCTCTTCGAGATTCTTCGAACACTTCTGATAGAGGCACAAAACGGAAGCTTGAACAGCAGTGCAAAGAGCATAAAGAATTGATTCCATTAATACGTAGCAGCTCATCACCTTCTCAAATCCGCTGTGTTGGGAGCAATCACATCTGCAGTCAGCATAAGAGAAAGTTGAGAAGTCTCATCTCATGCCCTGTTAACGAACAGCTATTCGTGACCAGTGCCCTGGATGGAGTAGTCAACTTGTGGCAGTTACAGGCCAGAGGGTCAAGTGCCTCTCTACTTAGTTCCGCCGACTGTGTATCTCCAAAGCAAAGGAGATGGCCAGAAGACATGGTCTGGCATCCAGAGGGGAACCGCGTATTTCTTGTTTATAGTGCTGATGGTGGGGACTCTCAGGTCTCAGTCATGAATCTGAACAAAAGTGAAGGGAAAGCTCGTGTTACTTTCCTTGAGGATAAGCCTCACTTTAAGGGCATTATCAACAGCATAATTTTCTTGCCTTGGGATAGCACGTCTTTTATCACTGGTGGAAGTGATCATGCCGTTGTACAATGGAAAGAGAAAGATGGGGAGAACACATGGAAGCCAAAGGCATTGCACAGAAACATACACTCTTCAGCAGTCATGGGGGTAGCAGGGATGCAGCAGAAGCCAATCGTACTTTCTGCAGGTGCAGACAAGAGAATTCTTGGATTTGACGTAAATGTTGGTAGAACAGAGTTCAAGCATCAGATAGAAAGCAAATGCATGAGTATTTTGCCTAATCCATGCGATTTCAACCTATTTATGGTCCAAACAGGTACTCCTGGAAAGCAGCTCCGGTTATATGATATCAGACTTAGGCAGACAGAACTACATGCCTTCGGGTGGGAGCAAAAGAGCAGTGAATCACAGTCAGCATTGATAAATCAGGCTTGGTCGCCTGATGGTTTGGTTCTCACATCTGGGTCTGCTGACCCTGTAATCCATCTGTTTGATATCAGGTACAATTTGCACAAGCCTTCCCAATCCATTAGAGCTCATCAGAAACGAGTCTTCAAGGCTGTATGGCTTCAGTCTCTACCCCTCCTTATTTCCATATCTTCTGATCTGAACGTTGGATTGCACAAAACAGCTTGA 5469 45.77 MDRRRPASPVYARQWSGGSSSTGSSSPAMSPAHPQSRLGTSSTIKRAQNVAAKKAAERLAQVMAQTPEDDDEDDDLNFRFAAPPPPRDWLTSILVILYLFHCGLVVEFSFSSLYFLLSCLLRSVHLQHGMCSFVLDTVEIVINPARSISRGRNFVEHVPQVRSTSAGRSSMSVRSTQIVPPSKSSLRTPVSIPPIEPPSNRNSDRRFTPDIGQVNSKDAGDQREASALRDELDMLQEENENLLEKLRLAEDKREEVEARARMLEKQVATLGEGVSLEAKLLSRKEAALRQREAALKAAKPTNDSRNEEIAALRSEIENLKDESSAATEQLREAESEAKALRVMTQRMILTQEEMEEVVLKRCWLARYWGLAVQYDFFSARCLGVCADIAISKHEYWSSLAPLPFEVVISAGQKAKEEPEGRNDQDRSKLIQDLNDLSGEGNIESMLSVEMGLRELTSLKVEDATVLALAQHRRPSLVHQSGSFFPQLVHRFVHFFVSIFQWMDYCLLTKQIFLESGLRELFQSLKNSKASADPKFSEAFGKLITDTVVRSRCTKNFSKCRKLSIFEAWLTYFWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVDVERGLVELRKLGIEQQLWEASRKEIDQSSAFALTDPPQILNPLLPTNVLPSPQIISFCQLPTISFPVPKKLLRNHSTPHHHHHHHHLIMLSRAGNVLWMEEDSKEEDSASWTKNNTDTHLTHPANSSVFDNNHQITSLSTFKSMLDVEDDWCINDNALHNHTHHADINDITFSQNFTDPPDNLLLPSADSSSSCSPSSSVFNNIDPSQLRFFLPPTRTFSSLHKPISNNPLDHPFDLGAEFGFLDVQASNSSTLLNNGGGLLTGFTDLSPTSQMNTPNLCLASQLTENCSGLAGFQSFDDNLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSNLGGLSPDGGWFSNRIDGGVGKNEIGDENGKKRKMIYADEFQDTSIDTSRFNYDSDDFTEHNNSKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPPGTALTPSTSFHPLTPTPSSLSSRIKEELCPSSFPSPNAQQPARVEVRVREGRAVNIHMFCSRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEEHDVHPEQIKAILLDSVGLNDNRVPGSTAAIVGIPEKSAKTKAAHRKLGIPKNGEILQFILPTSLEVKNMAGPVEETDGTNSKEEQEEALVALIDHRCREVQNLKQRISYYTSQVSLLSYYSLLFLEEAEKRLHDSESKLARLRRQGNAVSSKDSFRSRAVSVKVEQTVNEGSKPQPYPKPELVIPAVVPKISQNSALAGNGAKISNSSSSRAQSSPSHVKNVIKVEGDKSTGNSSLRDSSNTSDRGTKRKLEQQCKEHKELIPLIRSSSSPSQIRCVGSNHICSQHKRKLRSLISCPVNEQLFVTSALDGVVNLWQLQARGSSASLLSSADCVSPKQRRWPEDMVWHPEGNRVFLVYSADGGDSQVSVMNLNKSEGKARVTFLEDKPHFKGIINSIIFLPWDSTSFITGGSDHAVVQWKEKDGENTWKPKALHRNIHSSAVMGVAGMQQKPIVLSAGADKRILGFDVNVGRTEFKHQIESKCMSILPNPCDFNLFMVQTGTPGKQLRLYDIRLRQTELHAFGWEQKSSESQSALINQAWSPDGLVLTSGSADPVIHLFDIRYNLHKPSQSIRAHQKRVFKAVWLQSLPLLISISSDLNVGLHKTA 1822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7869398 7888872 + CmoCh13G008600.1 Cmo13g00860 394915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00860 1822 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1284 1821 - -
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 165 189 - -
Cmo13g00860 1822 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1047 1096 IPR011598 GO:0046983
Cmo13g00860 1822 CDD bHLH_AtAMS_like 1050 1113 - -
Cmo13g00860 1822 Coils Coil 225 266 - -
Cmo13g00860 1822 SMART finulus 1053 1102 IPR011598 GO:0046983
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1364 1390 - -
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 165 224 - -
Cmo13g00860 1822 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1284 1821 - -
Cmo13g00860 1822 Coils Coil 1086 1106 - -
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1416 1469 - -
Cmo13g00860 1822 SUPERFAMILY WD40 repeat-like 1508 1816 IPR036322 GO:0005515
Cmo13g00860 1822 Coils Coil 1342 1362 - -
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1014 1049 - -
Cmo13g00860 1822 Pfam Helix-loop-helix DNA-binding domain 1054 1096 IPR011598 GO:0046983
Cmo13g00860 1822 Coils Coil 302 343 - -
Cmo13g00860 1822 Gene3D - 1419 1702 IPR015943 GO:0005515
Cmo13g00860 1822 Gene3D - 1041 1110 IPR036638 GO:0046983
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1444 1458 - -
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1359 1397 - -
Cmo13g00860 1822 CDD Prefoldin 222 333 - -
Cmo13g00860 1822 SMART WD40_4 1643 1683 IPR001680 GO:0005515
Cmo13g00860 1822 SMART WD40_4 1490 1533 IPR001680 GO:0005515
Cmo13g00860 1822 SMART WD40_4 1781 1820 IPR001680 GO:0005515
Cmo13g00860 1822 SMART WD40_4 1593 1636 IPR001680 GO:0005515
Cmo13g00860 1822 SMART WD40_4 1738 1776 IPR001680 GO:0005515
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1416 1437 - -
Cmo13g00860 1822 Gene3D - 1703 1822 IPR015943 GO:0005515
Cmo13g00860 1822 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1050 1116 IPR036638 GO:0046983
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 13 48 - -
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1021 1040 - -
Cmo13g00860 1822 CDD ACT_UUR-ACR-like 1168 1209 - -
Cmo13g00860 1822 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01574 Cmo-Chr11:11313928 Cmo13g00860 Cmo-Chr13:7869398 3.52E-136 dispersed
Cmo13g00860 Cmo-Chr13:7869398 Cmo14g00777 Cmo-Chr14:3943672 1.73E-144 dispersed
Cmo08g00022 Cmo-Chr8:113831 Cmo13g00860 Cmo-Chr13:7869398 9.01E-117 transposed
Cmo12g01113 Cmo-Chr12:10166087 Cmo13g00860 Cmo-Chr13:7869398 2.85E-77 transposed
Cmo11g00012 Cmo-Chr11:55865 Cmo13g00860 Cmo-Chr13:7869398 1.49E-12 wgd
Cmo13g00860 Cmo-Chr13:7869398 Cmo18g00238 Cmo-Chr18:1579409 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10855 PF00010 HLH 8.60E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00860 - - csv:101207060 902.123