Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00872 ATGAGGCCTTCGAATCTTGGTGCTCTCAGATCAGCTCAGGGCAGCTACTCCATGAGTTATCTGATTCACATTAATTTATCTGTTCGAATCACTGGGGATTGTCGACTTCTGTGCTTTCTGAGGGTTTGGGTAATGGCTCCGACAGAGGTGAAAACGCTGTATCTGCAATTTCTTCCGCTTCTGACGTTAATTTGGGTGTCCAGAATGGGCGCCTCGGACACTATGTTCAACGACTCAGTAAGTGGGCATTCGGTTGTTTCCCGAAATGAAAACCCAAAAGGACGGTGCCCACATGGTTGGTTTATTAGCCCAAACAGGACTAAGTGCTACGGTTTTATGTCGAGCCCTAAATCATGGAATGAATCAGAGAACCAATGTAATGGTTTAGGCGGGAACTTGGCATCTCTGATAACATATCAAGAGTTCAGCTTTGCACAAAACATGTGTAATGGAACTTTTGGTGGCTGTTGGGTGGGTGGCAGAGTGTTCAACTCTTCAAATAATCTTGTTTGGAAGTGGTCAGATAATGTTTCGAAATGGAACGATTCCATTATTCCCAGCACAGCTTCACAATCTAATTGCAAAAATGTCTCTTGCCGCATGAATGATTTGATTGAAACATGTGCTTTGATAGTTGGTGGACTAGCAGCACCCTTCCTTAGGGATGAGAAATGCAACAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCAGCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACGACGTTTGCTGTTGTGATTTGGCTTCTTGCCTACAAGAGGAGCAAAAAACGGAGAAGGTCTCGGAAGGTATCCAATCCTGCAGCTTCTGCACTGGTACCACCTTCATGGAAGGTGTTTACCAAGGAAGAGCTGAGATCTATTACAAAAAACTTTAGTGAGGGAAACTGTCTTCTTGGAGACACAAAAACGGGTGGTACATACAGTGGACTCTTACCCGATGGTTCAAGAGTTGCAATTAAAAGATTAAAGAAGTCCACCTTTCAGAGGAAAAAAGAGTTTCATTCTGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAGTTTGGTTGCCCTGAAAGGATGCTGCTATAACCATGGTGACCGGTACATTGTTTATGAATTCGTTGTCAATGGACCCTTAGATCGATGGCTTCACCATGTACCGAGAGGTGGTCGAAGCTTAGATTGGACCATGAGAATGAAAATTGCCACGACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACACGTGGTACATCGAGATATCCGTGCCAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTGGCATATGAAGCGATGCACGAGAGGACGGTTATGGCAGGAGGAACCTACGGATACCTTGCTCCTGAATTTGTCTACAGAAATGAACTAACGACAAAGAGCGATGTCTACAGTTTTGGGGTGCTACTGCTTGAAATTGTGACGGGTCGGAGGCCTACACAGGCAGTTGATTCAGTTGGCTGGCAGAGCATTTTCGAATGGGCAACACCACTTGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTTGTATAACAGGCAGTTCTACTTCTGGGATTCCGGAGTGTGGTGTTGTTCAGAAGGTGGTGGACCTTGTGTATGCTTGCACGCAGCATGTCCCATCCATGCGCCCTAGAATGTCGCATGTTGTTCATCAGTTGCAGCAATTGGCCCCTTCACCTCTCACTATGAAGTAA 1815 45.29 MRPSNLGALRSAQGSYSMSYLIHINLSVRITGDCRLLCFLRVWVMAPTEVKTLYLQFLPLLTLIWVSRMGASDTMFNDSVSGHSVVSRNENPKGRCPHGWFISPNRTKCYGFMSSPKSWNESENQCNGLGGNLASLITYQEFSFAQNMCNGTFGGCWVGGRVFNSSNNLVWKWSDNVSKWNDSIIPSTASQSNCKNVSCRMNDLIETCALIVGGLAAPFLRDEKCNSSHPFICMINLDDRCQRMHCHKEYLVILAVVSGLIFCTTFAVVIWLLAYKRSKKRRRSRKVSNPAASALVPPSWKVFTKEELRSITKNFSEGNCLLGDTKTGGTYSGLLPDGSRVAIKRLKKSTFQRKKEFHSEIARVARLRHPSLVALKGCCYNHGDRYIVYEFVVNGPLDRWLHHVPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPTQAVDSVGWQSIFEWATPLVQAHRYLDLLDPCITGSSTSGIPECGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTMK 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7931230 7934499 + CmoCh13G008720.1 Cmo13g00872 394927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00872 604 SUPERFAMILY Protein kinase-like (PK-like) 290 593 IPR011009 -
Cmo13g00872 604 Pfam Lectin C-type domain 116 234 IPR001304 -
Cmo13g00872 604 Gene3D Phosphorylase Kinase; domain 1 274 391 - -
Cmo13g00872 604 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 49 597 - -
Cmo13g00872 604 PANTHER - 49 597 - -
Cmo13g00872 604 Gene3D Transferase(Phosphotransferase) domain 1 392 598 - -
Cmo13g00872 604 Gene3D - 79 237 IPR016186 -
Cmo13g00872 604 ProSiteProfiles Protein kinase domain profile. 316 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00872 604 Pfam Protein tyrosine and serine/threonine kinase 337 593 IPR001245 GO:0004672|GO:0006468
Cmo13g00872 604 CDD CLECT 108 233 - -
Cmo13g00872 604 ProSitePatterns Tyrosine protein kinases specific active-site signature. 438 450 IPR008266 GO:0004672|GO:0006468
Cmo13g00872 604 SUPERFAMILY C-type lectin-like 85 237 IPR016187 -
Cmo13g00872 604 SMART CLECT_2 96 234 IPR001304 -
Cmo13g00872 604 SMART tyrkin_6 325 593 IPR020635 GO:0004713|GO:0006468
Cmo13g00872 604 ProSiteProfiles C-type lectin domain profile. 105 234 IPR001304 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00872 Cmo-Chr13:7931230 Cmo10g00657 Cmo-Chr10:3018920 2.63E-62 dispersed
Cmo13g00872 Cmo-Chr13:7931230 Cmo18g00246 Cmo-Chr18:1619425 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74791 PF07714 PK_Tyr_Ser-Thr 2.70E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00872 - - mcha:111008550 1016.91