Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00883 ATGGAATTTGGATCTTTTGAAAGCGAGGCCTCAAACGTCTCGGTTATAGCACGTCCTCTGCTTCTGCTCTGTAAAAGGACATGGCCCTACCTCTCCTCTGTGCTTCGTTTTTTGGGTCTCTCTGAATTTTTCTGGGTTGAAGGAAACCTCCGTGAATTTGCCGTCGAAGCGATAATTGTTCATCTGGAATCTGCATCCGTTGAAGTTCTGCTTGGATTGCTCTGTTCATCCAAGCTTATTGTTTGGGTTCAATCTGAAACTAAGATGACATCGAGAGTAGAAATTGATGAGGACTCTGAAACGAAGGGAAGTATGTGGGTTCTAGACCAGAAGCTGGATCAGCCTATGGACGAAGAAGCTGGGAGACTTAGTAACATGTACAAAGAGAAGAAATTCTCGGTATTGTTGCTTCTTCGACTTGCATATCAAAGCCTTGGAGTGGTTTATGGAGATTTGGGGACTTCTCCTCTATACGTTTTCTACAATACATTTCCTCATGGGATATCTGATCCGGAGGATGTAATTGGAGCACTTTCATTAATTATATACTCTCTTACTCTCATTCCACTCATAAAGTATGTATTTATCGTGTGTAAAGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTTTACTCCTTGTTATGTCGTCATGCAAAAGTAAAAACTATTCCAAACCAACATCGAACTGATGAAGAGCTAACAACATATAGCCGCTCTAAATTTCATGAGCACTCATTTGCTGCTAAAACTAAAGGATGGCTTGAAAAACGATCATCCAGGAAGAATGCTTTGCTCATTCTTGTTCTTGTTGGCACTTCCATGGTTGTTGGAGATGGAATTCTCACTCCTGCAATATCGGTTTTATCTGCTGCGGGAGGGATCAAAGTCAACCACCCCCATGTGAGCAGTGATGTAGTTGTGCTTGTTGCTGTTGTAATACTAGTAGGATTATTCAGCTTGCAACGCTATGGTACTGATAGAGTTGGTTGGCTCTTTGCTCCAGTTGTGCTACTTTGGTTTCTATTAATTGGAGGTATAGGCATGTTCAACATCTGGAAATATGATAAAACGATTCTACGAGCCTTTTCACCTGTGTATATTTTTCACTATTTTAGAAGGCGAGGGATGGATGGTTGGACGTCCCTCGGAGGCGTGTTGCTGAGTATAACAGGCACAGAGGCTTTATTTGCGGATTTGGCTCATTTTCGTGTAGCAGCTATACAAATTGCTTTCACAGTAGTTGTTTTTCCTTGCCTTCTCTTGGCATATTCTGGACAAGCTGCCTACCTTATGAACAATACGGAGCATGTGGCTGATGTCTTCTATCATTCAATACCAGATTCCATATATTGGCCCGTGTTTGTTGTTGCAACGGCTGCTGCTGTGGTTGCTAGTCAAGCCACTATAACTGCAACATTTTCAATAATCAAGCAGGCTCTTGCTCATGGCTGCTTTCCAAGAGTTAAAGTTGTTCATACCTCAAAGAATTTCCTTGGTCAGATATATGTTCCAGATATTAACTGGATTCTCATGGTTCTGTGCATTGCTGTGACAGCAGGATTTAAGAATCAAAGTCAAATTGGAAATGCTTATGGGACAGCGGTTGTGGTAGTCATGCTTGTGACCACACTGCTCATGATTCTAATCATGATCTTGGTGTGGCGCTGTCATTGGATCATCGCCCTGATATTCACTGGACTCTCGCTTGTTGTGGAATGCGGTTACTTTTCAGCTGTTCTCTTCAAGGTTGATCAAGGTGGCTGGGTTCCCCTAGTGATTGCTGCAGCCTTTCTTATCATCATGTACGTGTGGCATTATGGTACTGTTAAACGATACGAATTCGAGCTGCACAGTAAAGTTTCAATGGCATGGGTTCTCGGTCTCGGTCCCAGTCTAGGACTCGTCCGCGTTCCTGGAATTGGGCTTGTCTATACCGAGCTAGCAAGCGGCGTACCTCACATATTTTCCCATTTCATTACTAATCTCCCAGCTATCCATTCTGTCGTTGTGTTTGTCTGTGTGAAATATCTCCCAGTCTACACAGTGCCAGAGGAAGAAAGATTCCTTGTCAAGCGGATAGGAACAAAGGATTTCCACATGTTTCGTTGCGTTGCTAGATATGGTTACAAAGACCTCCACAAAAAAGATGATGATTTTGAGAAAAAGCTTTTTGATAGCATCTTTCTCTTTGTCAGGCTTGAATCCATGATGGAGGGTTGTTCAGACTCTGATGAGTACAGTTTGTATGGGCAGCAAACTGAGCGTTCAAGGGACGGCCTGTTGATTGCCAGCCATGGCAATGCAGCACCAGCTTCATCCAATGTGGGCACTACCCTCTCGTCAGTTGACTCGATCGTGCCGGTTGGATCTAACACAGTAAGATCATGTGAGCAAGCAAGCAGCAACCATACTGATAGCGATGAGATTGAGTTCTTGATTAGGTGTAGAGATGCTGGGGTGGTGCACATTCTGGGAAACACTGTAATTAGAACAAGGGAATCGAAATTCTTCAAGAGGATAGCTGTGGATTACGTATATGCCTTTCTTAGGAAGATTTGCAGGGAGAACAGTGTGATTTTCAATGTTCCTCATGAGAGTTTATTAAACGTTGGCCAAATTTTCTATGTATAG 2634 42.98 MEFGSFESEASNVSVIARPLLLLCKRTWPYLSSVLRFLGLSEFFWVEGNLREFAVEAIIVHLESASVEVLLGLLCSSKLIVWVQSETKMTSRVEIDEDSETKGSMWVLDQKLDQPMDEEAGRLSNMYKEKKFSVLLLLRLAYQSLGVVYGDLGTSPLYVFYNTFPHGISDPEDVIGALSLIIYSLTLIPLIKYVFIVCKANDNGQGGTFALYSLLCRHAKVKTIPNQHRTDEELTTYSRSKFHEHSFAAKTKGWLEKRSSRKNALLILVLVGTSMVVGDGILTPAISVLSAAGGIKVNHPHVSSDVVVLVAVVILVGLFSLQRYGTDRVGWLFAPVVLLWFLLIGGIGMFNIWKYDKTILRAFSPVYIFHYFRRRGMDGWTSLGGVLLSITGTEALFADLAHFRVAAIQIAFTVVVFPCLLLAYSGQAAYLMNNTEHVADVFYHSIPDSIYWPVFVVATAAAVVASQATITATFSIIKQALAHGCFPRVKVVHTSKNFLGQIYVPDINWILMVLCIAVTAGFKNQSQIGNAYGTAVVVVMLVTTLLMILIMILVWRCHWIIALIFTGLSLVVECGYFSAVLFKVDQGGWVPLVIAAAFLIIMYVWHYGTVKRYEFELHSKVSMAWVLGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGTKDFHMFRCVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESMMEGCSDSDEYSLYGQQTERSRDGLLIASHGNAAPASSNVGTTLSSVDSIVPVGSNTVRSCEQASSNHTDSDEIEFLIRCRDAGVVHILGNTVIRTRESKFFKRIAVDYVYAFLRKICRENSVIFNVPHESLLNVGQIFYV 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7976775 7982132 - CmoCh13G008830.1 Cmo13g00883 394938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00883 877 Pfam K+ potassium transporter 142 712 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cmo13g00883 877 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 90 876 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cmo13g00883 877 PANTHER POTASSIUM TRANSPORTER 90 876 - -
Cmo13g00883 877 TIGRFAM kup: potassium uptake protein 140 876 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00883 Cmo-Chr13:7976775 Cmo18g00252 Cmo-Chr18:1675166 0 dispersed
Cmo13g00881 Cmo-Chr13:7970476 Cmo13g00883 Cmo-Chr13:7976775 0 proximal
Cmo13g00882 Cmo-Chr13:7973865 Cmo13g00883 Cmo-Chr13:7976775 2.60E-53 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00883 K03549 - csv:101217915 1405.19