Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00886 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAGTTCGTGGAGATTGATCCTACCGGTCGATACGGACGGTATAAGGAAGTTTTAGGAAAAGGGGCATTCAAAAGGGTATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGATTAAGGTAACAGATTTATTGAGGAACTCTGATGATTTGGAGCGACTATATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAGTTCATGGGTTGATACGAAGAACGAAAACATCAACTTCATTACAGAGATATTCACTTCAGGGACACTGCGACAATATAGAAAGAAGCACAAGCATGTTGATTTGAGAGCACTGAAAAAATGGTCGAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATCGGTGACTTAGGACTTGCTGCCATTCTTCAGCAAGCTCGTTCAGCTCACAGTGTCATTGGAACACCCGAGTTTATGGCTCCAGAGTTTTATGAGGAGGAATACAATGAACTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATGTTGAATGTGCCAATGCTGCTCAAATATATAAGAAGGTCACATCAGGGATTAAACCAGCTTCACTGGCAAAAGTCACCAATTTAGGAGTTAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTACTCGCTTGCCTGCAAAAGATCTTTTAATGGATCCATTTCTCCAAGCAGATGATGATCATGAAAGTATACCTCGTAATCTACAATCAAAGAATACAGGCAAGGTTATAAAAATTGATTTTGTCGATGATACTTCTGCTGAGACTTGTAGAGATTTTAGTATGCATGGTCAAAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGATTCCATGGGTAATTTTCGCAATATCCATTTCCCATTTGATACTGAAGCTGACACAACAGTTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGACCTTTCTGATCAAGATGTCTCCACAATTTCTGAAATGATTGAAACAGAAATTCGATCTTACATTCCAGATTGGACATCAGTTGAGAATTCTGTGGATAATGTAGGAGTTGATGTTGCAATTTCTGATAGCTCGACGTCTGACACAAAGAATGTTTCCTCTCCATTGTCTATTGAATCTAATAATCTTGCTTTGGAGGTATTGCCTTCAGGTCGCAAGTATTGGTCGGACTCTCCAAAAGGTATTGGTGGGTGCTCTCCTATTAAGCCAGGTCCTTCAAACTTGTCTCTTACCTCAGATCAGAATGTTGAATCCTCTAGCAGCCACATACTTGGGAATAATCTTGATCATTCTGCAATAATTAAGGGACTGGAAAGTGAACTTTTGTCAGAGGGTGATATTCATGATAGCTCTGAGGCACATCTTTTAGAAGAAAACTGTTCTGATGAATCAGTTGACCTCAAAATAATGGCTGAGAAACTTAAAAATCTGTTGACACAACAACAAAAGGAATTAGATGAACTAAAGAGAGAGCATAAATTAGTTGTTTCAGAACTTCTCACTGAACTAACACCTGAATCTTGTCAGAAGGTTTTAGGGATGTGTAAGCTAAAGCGTTCTGATTTTGCGTTTTATCTCTGA 1764 38.32 MSQDLSLDQDLDESDPEFVEIDPTGRYGRYKEVLGKGAFKRVYRAFDELEGIEVAWNQIKVTDLLRNSDDLERLYSEVHLLKTLKHKNIIKFYSSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPEFYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVTNLGVKAFIEKCIANVSTRLPAKDLLMDPFLQADDDHESIPRNLQSKNTGKVIKIDFVDDTSAETCRDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDTEADTTVSVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWTSVENSVDNVGVDVAISDSSTSDTKNVSSPLSIESNNLALEVLPSGRKYWSDSPKGIGGCSPIKPGPSNLSLTSDQNVESSSSHILGNNLDHSAIIKGLESELLSEGDIHDSSEAHLLEENCSDESVDLKIMAEKLKNLLTQQQKELDELKREHKLVVSELLTELTPESCQKVLGMCKLKRSDFAFYL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7991434 7994910 + CmoCh13G008860.1 Cmo13g00886 394941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00886 587 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Cmo13g00886 587 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00886 587 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00886 587 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 338 392 IPR024678 GO:0004674|GO:0005524
Cmo13g00886 587 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cmo13g00886 587 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 8 580 - -
Cmo13g00886 587 Coils Coil 532 559 - -
Cmo13g00886 587 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Cmo13g00886 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cmo13g00886 587 Gene3D - 334 424 - -
Cmo13g00886 587 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00886 587 CDD STKc_WNK 26 286 - -
Cmo13g00886 587 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 580 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00886 Cmo18g00155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00886 Cmo-Chr13:7991434 Cmo17g00224 Cmo-Chr17:1320289 1.14E-180 dispersed
Cmo20g00670 Cmo-Chr20:3271666 Cmo13g00886 Cmo-Chr13:7991434 1.21E-125 dispersed
Cmo13g00886 Cmo-Chr13:7991434 Cmo18g00155 Cmo-Chr18:1078095 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74794 PF00069 Pkinase 6.00E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00886 K08867 - csv:101206177 1002.66