Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00891 ATGGCGTATACTTATATGGTGTTTAAGAGTCACTCGATACCATACACTGGAAGTTCTACCCCTTCGATTTCACCCTCGGTTTTGAAATCTCTGCCAGAGCCCTTACCTGAGTTTTGTTCGAAGATCCTCCTTGACATCGCTTCAAAATCTGCAGTTATCTTTGTGCCTTCTGAGCTTGTTGAGAGCTTAATTTGGTTGGGAAACACAGTCCGCGGTAGCAACGGAACTGGAGAAAGGAGATTTCTTACTCCGTCGTGTATTTTCCCGCCCATTTTCCAAAGCCAATACTCCCATTTTCTCTGCTTTCTTCCGGTAGGTTTGGCCGCCGATCTCTACTCCTCCGCGCTATTTCGGTTCTATGTTATACGTTTCACAGCGTCTTACGAATCTTCAACTGTTCTCAAACCCTGTCCATCCCTTCCAGTGCAAAAGATGAGTGCTCCTATGGAGATTTCTCTCCCAAACCCTCCCTTAGATGCGCAGGTGCCTGAATCAAATGGCATCGTCTCCGAGTCAACTGCTTCTTCTATTGTAAATGAAGACAAAATTCTCGTTTCAGTCGAGGTGTGTTTGAAATCCTCCAGCACAGCACGGATTGAAGATGTCCGGATGGCCGTTGAGAGAATGCTTGAGAAGAGAAGTTTAAGCTATGTTGATGGGCCCATTCCAGTCCCGCTCGATGACGCTTTTCTCGCGGAAAACGTGCAAGGAATCCGAATTTGCGACTCTGACGACAGTGTGCAAAACCATGATATCCTCTTATTCTGGCAAGTCAAACCAGTCGTTCATGTCTTTCAGCTAAGTGAAGAAGGACCCTGCGAGGAACTTGGTGGGGAAGGACAGATTTCTAGTTTTAATGAATGGATACTTCCTGCCAAGGAGTTTGACGGCATCTGGGAAAGTTTAATTTTTGAGTCTGGTCTCAAGCAAAGACTTCTGCGATATGCTGCTAGTGCTTTGTTATTCACAGAGAAGGGTGTCGATCCATTCCTAGTGTCATGGAATCGGATTGTCCTATTACATGGACCTCCAGGGACTGGTAAGACGTCTTTATGCAAAGCACTGGCTCAAAAACTGTCGATAAGATATCTGTCAAGATATCCACACAGCGTACTAATTGAAGTTAATGCACATTCACTGTTCAGCAAATGGTTTTCTGAAAGTGGCAAGCTGGTTGCAAAGCTATTCCAGAAGATTCAAGAGATGATAGAGGAAGAAGACAATCTGGTATTTGTTTTGATTGATGAAGTGGAAAGCTTAGCTGCTGCTAGAAAGGCTGCTTTGTCTGGTTCAGAACCTTCAGATTCCATTAGGGTTGTCAATGCGCTACTTACACAGATAGACAAGTTGAAATCGTCACCAAATGTGGTGATTCTGACAACTTCCAATATAACAGCAGCTATTGATATTGCATTTGTAGACCGTGCAGATATCAAAGCATATGTTGGTCCACCAACTCTTCAAGCACGTTATGAAATTCTGAGGTCCTGCTTGCAAGAGCTTCTACGCACTGGAATTTTGACAACGGTTGAGGGTTTTGACCACTCTATGCTTCCTAACTATGCTGGTTTGAAAGAGAAAATAAGCATTCGAGAGACCAAGAAGGTTGATGTACCACTTCACATCTGCAAACTATTGCTCGAGGTTGCTGAAGCATGCGAGGGTACTAGTGGACGTTTTTTAAGAAAACTCCCGTTCTTAGCTCATGCGACTCTAGCCAATCCATAA 1728 44.21 MAYTYMVFKSHSIPYTGSSTPSISPSVLKSLPEPLPEFCSKILLDIASKSAVIFVPSELVESLIWLGNTVRGSNGTGERRFLTPSCIFPPIFQSQYSHFLCFLPVGLAADLYSSALFRFYVIRFTASYESSTVLKPCPSLPVQKMSAPMEISLPNPPLDAQVPESNGIVSESTASSIVNEDKILVSVEVCLKSSSTARIEDVRMAVERMLEKRSLSYVDGPIPVPLDDAFLAENVQGIRICDSDDSVQNHDILLFWQVKPVVHVFQLSEEGPCEELGGEGQISSFNEWILPAKEFDGIWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRYLSRYPHSVLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMIEEEDNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQIDKLKSSPNVVILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLRTGILTTVEGFDHSMLPNYAGLKEKISIRETKKVDVPLHICKLLLEVAEACEGTSGRFLRKLPFLAHATLANP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8001849 8007668 - CmoCh13G008910.1 Cmo13g00891 394946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00891 575 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 338 356 IPR001270 GO:0005524
Cmo13g00891 575 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 452 466 IPR001270 GO:0005524
Cmo13g00891 575 CDD AAA 336 484 - -
Cmo13g00891 575 Pfam ATPase family associated with various cellular activities (AAA) 338 483 IPR003959 GO:0005524|GO:0016887
Cmo13g00891 575 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 177 574 IPR044539 -
Cmo13g00891 575 Gene3D - 284 500 IPR027417 -
Cmo13g00891 575 ProSitePatterns AAA-protein family signature. 456 475 IPR003960 GO:0005524|GO:0016887
Cmo13g00891 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 566 IPR027417 -
Cmo13g00891 575 SMART AAA_5 334 486 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00891 K22399 TRIP13; pachytene checkpoint protein 2 - csv:101207135 796.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00891 Cmo-Chr13:8001849 Cmo03g01215 Cmo-Chr3:9426105 3.71E-11 dispersed
Cmo13g00891 Cmo-Chr13:8001849 Cmo13g00893 Cmo-Chr13:8009145 5.87E-09 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g830 . . . . . . . . Cmo13g00891 . . . . . . Cpe20g00264 . . . . . . . . . . . . . . . . . Cone13ag0175 . Lsi02g00414 Csa01g00885 Chy12g01238 Cme12g01661 . . . . . . . . . . . Cma13g00860 . Car13g00702 . . . Bhi08g01662 Tan05g1968 Cmetu12g1001 Lac10g0493 Hepe07g2197 . . Cla03g00289 Cam03g0307 Cec03g0301 Cco03g0315 Clacu03g0308 Cmu03g0918 Cre03g0609 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012252 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00891 Cmo_Chr13 FPKM 15.348055 13.035341 14.512842 16.332077 10.136132 10.481932 9.426097 5.161829 4.034875 4.168429