Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00898 ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTCCACAAGGTGTTCGGTGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCAGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAATGAACTCGATGCCGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGCCTCAGATTATTAGCCCTCCACTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA 480 45.83 MEMGSLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQPQIISPPLLWNHNDIVSANSSVYFNGGI 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8029265 8029744 + CmoCh13G008980.1 Cmo13g00898 394953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00898 159 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 10 135 - -
Cmo13g00898 159 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Cmo13g00898 159 Coils Coil 95 122 - -
Cmo13g00898 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 135 - -
Cmo13g00898 159 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00077 Cmo13g00898 CCT
Cmo10g00109 Cmo13g00898 CCT
Cmo11g00077 Cmo13g00898 ECH
Cmo10g00109 Cmo13g00898 ECH
Cmo13g00898 Cmo18g00146 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01668 Cmo-Chr11:11836728 Cmo13g00898 Cmo-Chr13:8029265 1.25E-60 dispersed
Cmo13g00898 Cmo-Chr13:8029265 Cmo20g01156 Cmo-Chr20:11332397 4.81E-47 dispersed
Cmo10g00109 Cmo-Chr10:468151 Cmo13g00898 Cmo-Chr13:8029265 2.96E-66 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo13g00898 Cmo-Chr13:8029265 4.06E-63 wgd
Cmo13g00898 Cmo-Chr13:8029265 Cmo14g00684 Cmo-Chr14:3497304 5.71E-60 wgd
Cmo13g00898 Cmo-Chr13:8029265 Cmo18g00146 Cmo-Chr18:1025085 2.57E-96 wgd
Cmo13g00898 Cmo-Chr13:8029265 Cmo04g02817 Cmo-Chr4:20199087 4.97E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10860 PF03195 LOB 8.40E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00898 - - ahf:112722314 200.675