Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g00898 | ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTCCACAAGGTGTTCGGTGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCAGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAATGAACTCGATGCCGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGCCTCAGATTATTAGCCCTCCACTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA | 480 | 45.83 | MEMGSLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQPQIISPPLLWNHNDIVSANSSVYFNGGI | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8029265 | 8029744 | + | CmoCh13G008980.1 | Cmo13g00898 | 394953 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g00898 | 159 | PANTHER | PROTEIN LATERAL ORGAN BOUNDARIES | 10 | 135 | - | - | |
Cmo13g00898 | 159 | ProSiteProfiles | LOB domain profile. | 15 | 116 | IPR004883 | - | |
Cmo13g00898 | 159 | Coils | Coil | 95 | 122 | - | - | |
Cmo13g00898 | 159 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 10 | 135 | - | - | |
Cmo13g00898 | 159 | Pfam | Lateral organ boundaries (LOB) domain | 16 | 113 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g00077 | Cmo13g00898 | CCT | |
Cmo10g00109 | Cmo13g00898 | CCT | |
Cmo11g00077 | Cmo13g00898 | ECH | |
Cmo10g00109 | Cmo13g00898 | ECH | |
Cmo13g00898 | Cmo18g00146 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01668 | Cmo-Chr11:11836728 | Cmo13g00898 | Cmo-Chr13:8029265 | 1.25E-60 | dispersed | |
Cmo13g00898 | Cmo-Chr13:8029265 | Cmo20g01156 | Cmo-Chr20:11332397 | 4.81E-47 | dispersed | |
Cmo10g00109 | Cmo-Chr10:468151 | Cmo13g00898 | Cmo-Chr13:8029265 | 2.96E-66 | wgd | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo13g00898 | Cmo-Chr13:8029265 | 4.06E-63 | wgd | |
Cmo13g00898 | Cmo-Chr13:8029265 | Cmo14g00684 | Cmo-Chr14:3497304 | 5.71E-60 | wgd | |
Cmo13g00898 | Cmo-Chr13:8029265 | Cmo18g00146 | Cmo-Chr18:1025085 | 2.57E-96 | wgd | |
Cmo13g00898 | Cmo-Chr13:8029265 | Cmo04g02817 | Cmo-Chr4:20199087 | 4.97E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10860 | PF03195 | LOB | 8.40E-41 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g00898 | - | - | ahf:112722314 | 200.675 |