Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00906 ATGTCATCAACGATGAGGGAAACGTCGAGATTAGCTGAGGCCTCGATCAACGGCATCGTTCGACGAATGGTTAATCTTCCCAGAAGTATATTAGGAGGATTTTCAAGAGTTATGGGTGGAGGTAGAAGAAGCCAGACACTGCCATCCAGTTATCAATATCAGATTCTAGAGCAGGACGTACAAAACGTCCCGGAAGAATGGTCTTTCCTGACCAGTTTCGAGTATCAGTATGGCTCGATGCATCCTTTCTTTTACGCTTGTCGATTTGCAGAAGCTATGAAGATAGCAGAAGATGATCACAAGTTCTTGTTCTTGTATCTACATTCACCAGATCACCCATTTACTCCCTCTTTCTGCGAGGAGACACTGCGTTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAACTTCATCTCTTGGGGAGCACTTGCCAACAGAGGAGATGGCCTACAAATGGCTACAACATTGGGAGCTACCAACTACCCTTTCTGTGCTGTAATTGCTCCAGCTCGGGGCGAAAGCATAACAGTCCTGCAACAGCTTGAAGGGCCAGTTTCTCCAGCTGAGCTGGTGGAGATTCTACAGAGGACAATGGAGGATCAGGGATCAGCTTTTGGTTGCTCCAAACTAAAGCGAGACGAAAAGATAAGAGCCGATCGCAGGCTTCGAGAAGAACAAGACAGAGCATATCATGCAGCTCTTCAAGAAGACAAGGAGAGGGAAAGACTTAAAAATCGACCTCGGGCGATACCGAAGAAAGCACACGAAGAGAGGCTCAAGCAGAATTCTCCAAAGAAACATACTTTTACTCATGAAACTCCAAACAAGGATCCTGCAAGTAAAGCAAAGGATTCTCAGCCTAGCTCCCAGATACTAATAAGGTTTCCAAACGGTGAAAGGAGGGAGAAAAGCTTTTCAAGCATGGACAAGGTGAAGTCGATTTACAGCTATATCGACTCGCTCGGCCTGCCAGGTACTGAAAACTACAGATTGATAGCAAGCTTTCCAAGAAGAGTATATGGTATGGATGAGATGAATATGACACTGAAAGATGCTGGCCTCCACCCAAGAGCAAGCCTGTTCCTCGAGCGTCAGTGA 1095 46.03 MSSTMRETSRLAEASINGIVRRMVNLPRSILGGFSRVMGGGRRSQTLPSSYQYQILEQDVQNVPEEWSFLTSFEYQYGSMHPFFYACRFAEAMKIAEDDHKFLFLYLHSPDHPFTPSFCEETLRSELVVQFLDANFISWGALANRGDGLQMATTLGATNYPFCAVIAPARGESITVLQQLEGPVSPAELVEILQRTMEDQGSAFGCSKLKRDEKIRADRRLREEQDRAYHAALQEDKERERLKNRPRAIPKKAHEERLKQNSPKKHTFTHETPNKDPASKAKDSQPSSQILIRFPNGERREKSFSSMDKVKSIYSYIDSLGLPGTENYRLIASFPRRVYGMDEMNMTLKDAGLHPRASLFLERQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8053079 8055233 + CmoCh13G009060.1 Cmo13g00906 394961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00906 364 Pfam UBX domain 285 362 IPR001012 GO:0005515
Cmo13g00906 364 Gene3D Glutaredoxin 56 203 - -
Cmo13g00906 364 PANTHER FAS-ASSOCIATED PROTEIN 6 362 - -
Cmo13g00906 364 Gene3D - 286 364 - -
Cmo13g00906 364 SMART 45neu3 68 194 IPR006577 -
Cmo13g00906 364 CDD UAS 89 199 - -
Cmo13g00906 364 SUPERFAMILY Ubiquitin-like 241 362 IPR029071 -
Cmo13g00906 364 SMART ubx_3 279 363 IPR001012 GO:0005515
Cmo13g00906 364 MobiDBLite consensus disorder prediction 232 305 - -
Cmo13g00906 364 ProSiteProfiles UBX domain profile. 283 361 IPR001012 GO:0005515
Cmo13g00906 364 SUPERFAMILY Thioredoxin-like 62 201 IPR036249 -
Cmo13g00906 364 MobiDBLite consensus disorder prediction 232 278 - -
Cmo13g00906 364 CDD UBX 290 362 - -
Cmo13g00906 364 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 6 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00906 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101205471 631.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00943 Cmo-Chr2:5773750 Cmo13g00906 Cmo-Chr13:8053079 2.17E-29 dispersed
Cmo04g01979 Cmo-Chr4:10179142 Cmo13g00906 Cmo-Chr13:8053079 8.45E-06 dispersed
Cmo04g02951 Cmo-Chr4:20889029 Cmo13g00906 Cmo-Chr13:8053079 4.64E-38 dispersed
Cmo13g00906 Cmo-Chr13:8053079 Cmo16g01046 Cmo-Chr16:7318961 6.33E-14 dispersed
Cmo13g00906 Cmo-Chr13:8053079 Cmo15g01375 Cmo-Chr15:9365759 2.13E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00906 Cmo_Chr13 FPKM 2.912578 1.695205 2.978054 3.849552 10.905913 11.303767 9.803221 5.003449 4.163073 4.058759