Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00911 ATGGATTCGAAGTCACAGATTCAATCCAATTTCTTCAACATTACTCTTCTGAAAAAAGTAGCCCTAATCATCCCCTTAAACCCGAGCGCAATCTCTACACCATCTCAAGCAAAGTATCAATTCGCCCAAACCAAATCCCTCCTCCGTCAAGCTCAATTCTCACTCACTCCTCCTCCTTCATCTCCTTCAACCATGTCCACAACCACTCTCCTCTTCTCTCTCATCCTCTCATCTCTTCCACTATTCAGTTCCACAACCAACATTCACTCCAACGCCTGCCGGTCCTTCTGCGGCAACATCACCGTCAACTATCCTTTCTCCCTCCAGAACGGCTGCGGCCATCCTGGCTACCGCGACCTTCTGTACTGCATGAACGATGTTCTAATGTTCCACATCCGATCCGGATCCTACAGAGTCTTGGACATCGATTACGCTTACGAATCCCTAACTCTCCACGACCCTCACATGTCGACCTGCGACACAATCGTCCTCGGCGGTCGAGGCAACGGCTTCGACGTCGAAGAGTGGCGGTCACCGTACCTAAATCCGACGTCCGATAACGCCTTTCTCCTCATCGGTTGCTCCGCCCAATCGCCGCTCTTCCAAGGATTCCCAAACAAGCATCTCGTCTGTAGAAACATTTCCGGTATGAGCTGCGAGGAGTATTACGACTGTCCGGCGTGGGATTTACTGGGCCATCGACAACCCGATCGGGTTTACGGGTCCGGCCCACCAGAGTGCTGCGCGATTCCTTTTGGGTCCATTAAGGCCATAAATCTCACGAAGCTCCAGTGTGAAGGCTATAGCAGTGCTTATAGTTTGGCCCCGTTGAGAATTAATGGGCCTGATGAGTGGGCCTACGGGATCCGTGTGAAATATTCCGTCCAAGCAAATGAGGACTTTTGCCGAGCGTGCCAAGCCACCGGCGGCACGTGCGGCTATGGCACCGATGGTGATAGACAGTTGTGCATGTGTGGGACCACTAATTCTACCTCTACATGTGATTTCCAAAATCGTCGTCACGTCGTATTCGGTGCCGAAGCCTGGTTTCGACATCCATTACCAATGGCGTTTTCCTCTCTTCTATCTCCGGTTTCGTGGCATTCTTCTTTCACTTGCAATTCTGAAGCGGCCTCTCTGTGTTTTGCTACCTTCGATTGTCCGAGTCCTCAGCGAAGGCGAAGCTTTAGCAAGTTCAGGGGTCTGAATTTCCACCTTCCGCCCTTGATTTCGGCTTCAAGAACGGTGGCCACCGCTGCTGTGTCACCGGCAGCTGTTGCAAATTCGGCCGCGCCAGTTACTTCATTCACTAATTTGATTGAATCTCTGATTAATCGCGTGGATTTGTCGGAGGATGAAGCGGAGGCGTCTCTTCAATATCTTCTCAACGATGCCAGCGAGGCATCAATTAGTGCTTTCCTCGTGTTACTCAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGACTTGCGAGGGCGATGATCAAGCGTAGTGTGAAAGTGGATGGCTTATTTGATGCCGTTGACATTGTTGGAACAGGTGGAGATGGAGCAAACACAGTAAACATCTCAACCGGTGCTTCAATACTTGCTGCAGCATGCGGCACAAAGGTTGCAAAGCAAGGAAACCGTTCGAGTTCTTCAGCATGTGGAAGTGCTGATGTCTTAGAGGCACTGGGGGTAGTTATTGATTTGGGACCTGAGGGAGTTGCCAAGTGTGTTGGTGAAGCTGGAATGGGCTTCATGATGTCTCCCAAATACCATCCTGCAATGAAGATTGTCAGTCCTGTCAGGAAGAAGCTAAAAGTAAAAACTGCATTTAACATACTGGGCCCTATGCTCAATCCGGCTAGAGTTCCTTTCGCTGTTGTTGGTGTATATTCTGAGAACTTGCATCGTGTTGCTGGATGGTTTAGGAGCTTTAATAATTGGTATTCATCTGTAGTCCCCAAAATGGCTAAAGCACTGCAACTATTTGGCATGAAAAGAGCATTAGTAGTTCACTCGGAGGGCTTAGATGAGATGAGTCCCCTTGGACCAGGACTTATTCTTGATGTAACACCTGAAAAGATTGATAAGTTTGCCTTTGATCCATTGGATTTTGGCATCCCTCGTTGCACTATAGATGACCTTCGAGGTGGAGACCCGGATTATAATGCAGAGGTCTTGAAGCGCATTTTATCCGGGGAAGAGGGGCATATTGCAAATGCACTTATCCTTAATGCTGCTGCCGCCCTTCTGGTTAGCAGCAAAGTGACCACCTTGGCCGAGGGAGTTAAGTTGGCTCGTGAAACTCAACGGTCTGGAAAAGCCATGAAGACTCTTAATTTGTTGATTGAACTCTCCAATGTAAGTAGTAGTGTGTACTTTCTCAATTTCCAGCTGTTATTAGCAGTTCTCATTCCCAGATTCGAATGA 2418 48.68 MDSKSQIQSNFFNITLLKKVALIIPLNPSAISTPSQAKYQFAQTKSLLRQAQFSLTPPPSSPSTMSTTTLLFSLILSSLPLFSSTTNIHSNACRSFCGNITVNYPFSLQNGCGHPGYRDLLYCMNDVLMFHIRSGSYRVLDIDYAYESLTLHDPHMSTCDTIVLGGRGNGFDVEEWRSPYLNPTSDNAFLLIGCSAQSPLFQGFPNKHLVCRNISGMSCEEYYDCPAWDLLGHRQPDRVYGSGPPECCAIPFGSIKAINLTKLQCEGYSSAYSLAPLRINGPDEWAYGIRVKYSVQANEDFCRACQATGGTCGYGTDGDRQLCMCGTTNSTSTCDFQNRRHVVFGAEAWFRHPLPMAFSSLLSPVSWHSSFTCNSEAASLCFATFDCPSPQRRRSFSKFRGLNFHLPPLISASRTVATAAVSPAAVANSAAPVTSFTNLIESLINRVDLSEDEAEASLQYLLNDASEASISAFLVLLRAKGETYEEIVGLARAMIKRSVKVDGLFDAVDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSADVLEALGVVIDLGPEGVAKCVGEAGMGFMMSPKYHPAMKIVSPVRKKLKVKTAFNILGPMLNPARVPFAVVGVYSENLHRVAGWFRSFNNWYSSVVPKMAKALQLFGMKRALVVHSEGLDEMSPLGPGLILDVTPEKIDKFAFDPLDFGIPRCTIDDLRGGDPDYNAEVLKRILSGEEGHIANALILNAAAALLVSSKVTTLAEGVKLARETQRSGKAMKTLNLLIELSNVSSSVYFLNFQLLLAVLIPRFE 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8072203 8078658 - CmoCh13G009110.1 Cmo13g00911 394966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00911 805 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 506 780 IPR035902 -
Cmo13g00911 805 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 435 501 IPR036320 -
Cmo13g00911 805 Pfam Wall-associated receptor kinase galacturonan-binding 93 153 IPR025287 GO:0030247
Cmo13g00911 805 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, CHLOROPLASTIC-LIKE ISOFORM X1 409 786 - -
Cmo13g00911 805 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 409 786 IPR005940 GO:0000162|GO:0004048
Cmo13g00911 805 TIGRFAM trpD: anthranilate phosphoribosyltransferase 440 779 IPR005940 GO:0000162|GO:0004048
Cmo13g00911 805 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 438 501 - -
Cmo13g00911 805 Pfam Glycosyl transferase family, a/b domain 506 771 IPR000312 GO:0016757
Cmo13g00911 805 Hamap Anthranilate phosphoribosyltransferase [trpD]. 438 781 IPR005940 GO:0000162|GO:0004048
Cmo13g00911 805 Pfam Glycosyl transferase family, helical bundle domain 439 497 IPR017459 -
Cmo13g00911 805 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 504 787 IPR035902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00911 K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] - cpep:111782839 649.432
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00911 Cmo18g00135 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00965 Cmo-Chr5:7762976 Cmo13g00911 Cmo-Chr13:8072203 2.10E-24 transposed
Cmo14g01602 Cmo-Chr14:12680076 Cmo13g00911 Cmo-Chr13:8072203 6.44E-37 transposed
Cmo13g00911 Cmo-Chr13:8072203 Cmo18g00135 Cmo-Chr18:959837 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g769 . . . Bda15g00552 . . . . Cmo13g00911 Cmo18g00135 . . . . . . . . . . . . . . . . . . . . . Cone2ag0914 Cone16ag0094 . . . Csa01g00860 Chy12g01261 Cme12g01686 . . . . . . . Bma08g00097 Sed08g2520 . . Cma13g00880 Cma18g00177 Car13g00721 Car18g00167 Cpe09g01019 . Bhi08g01623 Tan05g1996 Cmetu12g1069 Lac10g0458 Hepe07g2219 . . Cla01g01307 Cam01g1423 Cec01g1457 Cco01g1466 Clacu01g1372 Cmu01g1280 Cre01g1259 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009653 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00911 Cmo_Chr13 FPKM 13.940372 11.062016 15.969831 18.420227 16.813646 20.965847 19.325495 28.269711 30.974985 23.993134