Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00912 ATGGATTGTGATCATGTTTCTGCTCACCTTTCTTCAAACTGGGTTCTCCAGAAAGAACATAATTTTCCTTCTCTAAACCCACATTTGGCTTGTACCCTTTACGGAAAAAAGCTCCATTTTCATAACCCTGGTAACAAAATGAGTTTTTTAACAGGATCCTCCAAGAAATCTTGGCAGCCGATCATGACAGATGATACAACAACTTCCAGTTACTGGCTCAACTGGAGGGTTGTGCTTTGCATTATATGGGTTCTGCTTACACTGAGTTTTGCGTTGTTTCTGATATGGAAATATGAGGCCCGTGGGAATAAAGAGTGTAATAGGGAAGAAACTCAAAAGGAGGAAGCTGGAGCTTTGTATGATGATGAAACATGGCGGCCCTGTTTTAAAGGAATGCATCCTGCTTGGCTGTTGGCCTTCCGAGTGTTGGCTTTCTGTGTTCTCTTGGTGCTCCTCATTGTCACTGCTGTTGTTGATGGAGGCGACATATTTTACTTTTATACTCAGTGGACTTTTACGTCAATCACCATTTATTTTGGGGTATGTCCATCATTTTCAAAGAGCCCTTTTTCCATATATGTTCCTCTCGGTTTCCTTCTTCCTTCTTTATTTGCTTATAATCTCCACTTTTCTCTTGGATCACTGCTCTCCGTTTATGGCTGCTACCAATATCAGAAGAAAGTTAGTGGTGAGAAAGTGGATAATGTGGAGGGAGATGCAGAACAAGGCACTTCAACAAGTGGGGGCGGTTCAATTACTTCAAATACAGAGAAAAATCCATCCATTCGTGAAGAACATCACCTCATACGACAACGTGCAGGATTTTGGGGCTATGTCTTTCAGATTATCTTCCAGATGAATGCAGGAGCTGTTATGCTGACAGATTGCGTCTTTTGGTTCATAATCGTTCCATTTCTCACCATCAAGGATTACAACCTTAATTTTTTGATAGTAAATATGCACACAATCAATGCCGTTTTCTTGCTAGGAGACACCGCTTTGAACTCTTTGCATGCCTCAGTTCTAATAAATCACAACTTTTCAGCGATTTCCCTGGTTTCGAATCGGATATTTCTTCGTCTGGACGGTCATTTATGTAATCTTTCAATGGATCGTTCACGCTTCTGTGAGATTATGGTGGCCATATCCATTTCTGGATCTCTCATCTTCCTACGCCCCTCTTTGTTCTGCATTTTCATCAAAACTGATTGTCTTGTGATTTCAATGAACATGAAGGTACTTGACCGTGGCTCTAATGCACATTCCTTGCTATGGCATCTTCACACTGATCATAAGACTAAAACACCATGTATTTTCGACGCGGTGCCCTCAATCCTATCAATGCACGAGGTAATCGACGAAGCCGTCCTGAAAGATATATCATTAAACTTCTCCAAAGGAGGAAAAGAAGCATAA 1416 41.17 MDCDHVSAHLSSNWVLQKEHNFPSLNPHLACTLYGKKLHFHNPGNKMSFLTGSSKKSWQPIMTDDTTTSSYWLNWRVVLCIIWVLLTLSFALFLIWKYEARGNKECNREETQKEEAGALYDDETWRPCFKGMHPAWLLAFRVLAFCVLLVLLIVTAVVDGGDIFYFYTQWTFTSITIYFGVCPSFSKSPFSIYVPLGFLLPSLFAYNLHFSLGSLLSVYGCYQYQKKVSGEKVDNVEGDAEQGTSTSGGGSITSNTEKNPSIREEHHLIRQRAGFWGYVFQIIFQMNAGAVMLTDCVFWFIIVPFLTIKDYNLNFLIVNMHTINAVFLLGDTALNSLHASVLINHNFSAISLVSNRIFLRLDGHLCNLSMDRSRFCEIMVAISISGSLIFLRPSLFCIFIKTDCLVISMNMKVLDRGSNAHSLLWHLHTDHKTKTPCIFDAVPSILSMHEVIDEAVLKDISLNFSKGGKEA 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8081018 8083314 - CmoCh13G009120.1 Cmo13g00912 394967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00912 471 PANTHER UNCHARACTERIZED 56 184 - -
Cmo13g00912 471 PANTHER UNCHARACTERIZED 207 339 - -
Cmo13g00912 471 MobiDBLite consensus disorder prediction 235 260 - -
Cmo13g00912 471 MobiDBLite consensus disorder prediction 239 258 - -
Cmo13g00912 471 PANTHER PROTEIN, PUTATIVE-RELATED 56 184 - -
Cmo13g00912 471 PANTHER PROTEIN, PUTATIVE-RELATED 207 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00912 - - - csv:101203045 481.485
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00912 Cmo18g00133 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00912 Cmo-Chr13:8081018 Cmo14g00976 Cmo-Chr14:5218653 7.02E-28 dispersed
Cmo13g00912 Cmo-Chr13:8081018 Cmo14g00676 Cmo-Chr14:3444499 2.35E-52 wgd
Cmo13g00912 Cmo-Chr13:8081018 Cmo18g00133 Cmo-Chr18:950710 3.98E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g764 . . Bda06g00606 . . . . Bma12g01041 Cmo13g00912 Cmo18g00133 . . . . . Cpe20g00248 . . . . . . . . . . . . . . . Cone2ag0912 Cone16ag0096 . Cone19ag0143 Lsi02g00379 Csa01g00858 . Cme12g01688 . . . . Bpe07g00844 . . . Sed08g2518 . . Cma13g00882 Cma18g00175 Car13g00722 Car18g00165 . . Bhi08g01620 Tan05g2000 Cmetu12g1450 Lac10g0457 Hepe07g2221 . . Cla01g01305 . . Cco01g1464 Clacu01g1370 Cmu01g1277 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000506 3 9 1 2 2 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 11 8 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00912 Cmo_Chr13 FPKM 8.847379 9.596783 10.583591 9.155912 10.123301 8.699933 9.27841 11.156563 11.367594 10.226298