Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00915 ATGGAAGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATAAGAGGAAGACTTCTGTGCTATAGACAGGATTGGACGGGTGGGTTTCGCACCGGTATCAGGATCTTGGCCCCAACGACGTACATATTCTTCGCTTCAGCAATTCCGGTTATATCGTTCGGGGAGCAGCTAGAAAGGAATACATATGGGACTCTAACTGCGGTACAAACTCTAGCATCAACAGCACTTTGTGGCATTATCCACTCCGTGTTTGGGGGACAGCCTCTGCTCATCCTTGGCGTTGCTGAACCAACTGTTTTGATGTATACGTTCATGTTCGACTTTGCAAAGGACCGAAAGGAACTGGGGCAGGAACTATTCTTAGCCTGGACAGGATGGGTCTGTGTGTGGACAGCCATTTTGCTTTTCTTGCTTGCTGTGTTGGGTGCATGCTCCCTGATCAATAGGTTCACACGTCTTGCTGGAGAATTGTTCGGTCTGCTAATTGCTATGCTCTTTATGCAGCAGGCGATACGTGGTGTTGTGGAGGAATTCAGCATACCCCAAAGGGAAAATCCGAATCGTGTGGCACTCCAACCTCCCTGGCTCTTTGGCAATGGAATGTTTGCATTAGTGCTATCGTTCGGGCTTCTACTAACCGCCCTTAAAAGCCGCAAGGCTAGATCATGGCGCTATGGGACTGGTTGCCTACGAGGCTTTATCGCCGATTACGGAGTTCCACTTATGGTGCTCGTATGGACAGCGTTATCTTACATTCCAGTCAATAACGTCCCACATGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGAGCCTACTCAAACTGGACAGTCATAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTTCTCCTAGGCTTCCTTGTTATCCTCTGTGGACTTATAGGCATACCACCTTCTAATGGTGTAATTCCTCAGTCTCCTATGCACACTAAAAGCTTAGCTACCCTTAAACATCAGCTTTTGCGGAGCAAGCTGGTAGCAGCAGCGCGACAAAGTTTCCGTAAAAATTCGAACTTGAGTCAGTTCTACCAGAACATGCAAGAGGCATATAATGAGATGCAGACTCCTTTAATTTATCAAAATCCACCAGCTGTGGGGCTGAAGGAGTTGAAAGATTCCACCATCCAACTAGCTTCAAGAACTGGATACATTGATGCACCTGTGGATGAAACTGTTTTCGATGTGGACAAAGATATCGACGATCTTCTTCCCGTAGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAGTAATGGTTGGTGGTTGTGTTGCTGCCATGCCTCTTTTGAAGAAGATCCCGACTTCGGTTCTTTGGGGCTACTTCGCTTTCATGGCAATCGAGAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTACTGCTTTTCACTGCTCCGAATCGTAGATACAAGGTGTTGGAGGAATATCATGCGACTTTTCTAGAAACTGTCCCCTTCAAAACAATTGCTACTTTCACCCTGTTTCAGACAGTGTATCTGCTGATGTGTTTTGGTTTAACATGGATACCAATTGCTGGTGTTCTTTTTCCGCTGCTGATCATGCTGCTCGTCCCTGTGCGCCAGTATTTGCTCCCCAGGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATACGAGGAAGCCCCTGCAATCGCGTTTAATCCATCCTTCGAAGATCGAATGGGAAGAACTTCCAACATTGACGACGGTGAAATACTCGACGAGATGATCACGAGAAGCCGTGGCGAGATTCGGCGTACGCAGAGTTCGAAAATGACAAGCTCATCCCCAAATAGGGTAGAGGGCATCAAACCTACGTACAGCCCACAGATATCATCACAGAAACTGTACAGTCCACGGATCAATGAACTGAGAAGGGAGAGGAGTTCTCTATCTCCTGGAAAAGGACCTGGCTTTAAGCTGAATTCTAGTCCTAGTCCTAGTCCTAGTCCAAGTCCGAGTGCAGAGCCAGGGCCAGGACCATCCTTTAGAAATTAG 2175 46.16 MEETFFPFRGIKNDIRGRLLCYRQDWTGGFRTGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSVFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFSIPQRENPNRVALQPPWLFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPLMVLVWTALSYIPVNNVPHGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRSKLVAAARQSFRKNSNLSQFYQNMQEAYNEMQTPLIYQNPPAVGLKELKDSTIQLASRTGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQAVMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPRFFKGAHLQDLDAAEYEEAPAIAFNPSFEDRMGRTSNIDDGEILDEMITRSRGEIRRTQSSKMTSSSPNRVEGIKPTYSPQISSQKLYSPRINELRRERSSLSPGKGPGFKLNSSPSPSPSPSPSAEPGPGPSFRN 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8095554 8101479 - CmoCh13G009150.1 Cmo13g00915 394970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00915 724 PANTHER BORON TRANSPORTER 2-RELATED 1 693 - -
Cmo13g00915 724 MobiDBLite consensus disorder prediction 703 724 - -
Cmo13g00915 724 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Cmo13g00915 724 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Cmo13g00915 724 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016021
Cmo13g00915 724 MobiDBLite consensus disorder prediction 621 645 - -
Cmo13g00915 724 MobiDBLite consensus disorder prediction 621 724 - -
Cmo13g00915 724 Gene3D Helical hairpin bin 18 60 - -
Cmo13g00915 724 MobiDBLite consensus disorder prediction 646 678 - -
Cmo13g00915 724 PANTHER ANION EXCHANGE PROTEIN 1 693 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00278 Cmo-Chr1:1310631 Cmo13g00915 Cmo-Chr13:8095554 0 dispersed
Cmo05g00417 Cmo-Chr5:1919077 Cmo13g00915 Cmo-Chr13:8095554 0 dispersed
Cmo13g00915 Cmo-Chr13:8095554 Cmo14g01361 Cmo-Chr14:11281181 0 dispersed
Cmo13g00915 Cmo-Chr13:8095554 Cmo14g00972 Cmo-Chr14:5192107 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00915 K24194 - csv:101203606 1360.9