Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00918 ATGGGTTTAACTTCTCTACAAGTCTGTATGGACTCCTCTGATTGGCTGCAGGGCACCATTAACGAGGAGTCTGGCATGGATTCTTCGTCGCTATCAGGGGACATGCTGTCATGTTCAAGGCCACTGACAGAGAGGAGGCTTAGACCCCCACATGATCAAGCACTGAAATGCCCAAGATGTGACTCAACCCACACCAAATTTTGCTACTACAACAATTACAGCCTTACCCAGCCGCGTTACTTTTGCAAGACATGTCGTAGGTACTGGACCAAAGGCGGCACTCTTCGTAACATCCCTGTCGGTGGTGGCTGTCGAAAGAACAAGAAAGTTGCCACTACTAAGAAATCCAATGACCCACAACACCAACAGCCACAAAATCAACAGCCCATCTCCCAAAATCACCACCAAGGCTCTTCTTCTTCTTCTGCCCATCACATTCACAACCCCACTGATCTCCATCTCTCATTTCCCGACCAAGTACAATTCCCTCATTTCAACCATCTCATTGGAACAACCCCAAGTTTCATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAGCATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCTGATCACTTAGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGGCCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCATATGGGCTGTCACTCGATGGGAACACCATAGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCTACAACGAACCCATTGGTGTAA 990 47.58 MGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVATTKKSNDPQHQQPQNQQPISQNHHQGSSSSSAHHIHNPTDLHLSFPDQVQFPHFNHLIGTTPSFMDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVGGLAGDHIAAAGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8117156 8118644 - CmoCh13G009180.1 Cmo13g00918 394973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00918 329 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Cmo13g00918 329 PANTHER - 11 323 - -
Cmo13g00918 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 323 IPR045174 GO:0003700|GO:0006355
Cmo13g00918 329 MobiDBLite consensus disorder prediction 116 148 - -
Cmo13g00918 329 MobiDBLite consensus disorder prediction 100 152 - -
Cmo13g00918 329 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Cmo13g00918 329 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00231 Cmo13g00918 CCT
Cmo10g00299 Cmo13g00918 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00745 Cmo-Chr7:3369265 Cmo13g00918 Cmo-Chr13:8117156 9.40E-31 dispersed
Cmo13g00918 Cmo-Chr13:8117156 Cmo15g01373 Cmo-Chr15:9357157 3.07E-37 dispersed
Cmo13g00918 Cmo-Chr13:8117156 Cmo18g00127 Cmo-Chr18:911919 4.82E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10861 PF02701 zf-Dof 3.30E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00918 - - csv:101223232 526.168