Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00921 ATGAGGAATTTGAGCTGGTTCAAGCCAATTTCCATCAATGGGAAGCCTGGGAGGAGGCTTTCCCTTGGAGAGTACGAGCGGGCTGTGTCGTGGTCTAAGTACTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCAGACATGTCTCAGTTGTTCATTGGCTTCAAACTTGCTACTGGAAGGCACAGCAGGATTTACAGAGGCGTTTATAAGCAAAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAACTTGGCTAACTTTCTTGAAAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTTTTTTGCATAATCACCGAGTATATGGCGGGGGGCTCGTTAAGAAAGTATCTGCATCAACAGGAGCCACATTCGGTTCCGCTGAACTTGGTTCTGAAACTAGCACTCGAGATCTCGCGCGGGATGCAGTATCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAACCTTTTACTTGGTGAAGATATGTGCATTAAGGTAGCCGATTTCGGTATCTCATGCTTGGAATCTCAATGCGGAAGCACAAAGGGATTCACCGGAACATATCGATGGATGGCACCGGAAATGATCAAAGAAAAACACCATACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCTCTGCCTTCAGCTTGCCCGGAAGCGTTTCGTCATCTGATCAAGAGATGCTGGTCGAAAAATCCCAACAAGCGACCGCATTTCGACGAGATTGTTTCGATTTTGGAAGCTTATATGGAGTCTTACAATGAAGATCCAGAGTTTTTCTGTCATTACGTCCCTTCATCTAGAAATACTCCATTACAGTGCTTACCAAAATCCTTCAGCTTCTGCACCCACTGCGCCTTTGAACTGCCGTCGATTTCAGTGAAATCCTCTGCCGTGCCTCATCCTTCTGCGTTCATAGAGGAGTGTTTTGATGCTTTTGTGTGTGCCGATCTGAAAACCTTAGATTTCTGA 1167 45.16 MRNLSWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKLATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCIKVADFGISCLESQCGSTKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPEAFRHLIKRCWSKNPNKRPHFDEIVSILEAYMESYNEDPEFFCHYVPSSRNTPLQCLPKSFSFCTHCAFELPSISVKSSAVPHPSAFIEECFDAFVCADLKTLDF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8137683 8141838 - CmoCh13G009210.1 Cmo13g00921 394976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00921 388 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00921 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cmo13g00921 388 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Cmo13g00921 388 Gene3D Transferase(Phosphotransferase) domain 1 140 331 - -
Cmo13g00921 388 Pfam Protein tyrosine and serine/threonine kinase 61 311 IPR001245 GO:0004672|GO:0006468
Cmo13g00921 388 CDD STKc_MAP3K-like 63 311 - -
Cmo13g00921 388 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Cmo13g00921 388 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Cmo13g00921 388 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g00921 388 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Cmo13g00921 388 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Cmo13g00921 388 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Cmo13g00921 388 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Cmo13g00921 388 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Cmo13g00921 388 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00921 Cmo18g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00591 Cmo-Chr3:5670918 Cmo13g00921 Cmo-Chr13:8137683 7.89E-137 dispersed
Cmo12g00939 Cmo-Chr12:8727422 Cmo13g00921 Cmo-Chr13:8137683 8.78E-99 dispersed
Cmo13g00659 Cmo-Chr13:6946045 Cmo13g00921 Cmo-Chr13:8137683 2.16E-106 dispersed
Cmo13g00921 Cmo-Chr13:8137683 Cmo18g00354 Cmo-Chr18:2315755 5.51E-96 dispersed
Cmo13g00921 Cmo-Chr13:8137683 Cmo18g00125 Cmo-Chr18:888021 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74795 PF07714 PK_Tyr_Ser-Thr 1.50E-66 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00921 - - csv:101222762 672.159