Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00922 ATGTACGCATCGTCCTCCGTTTCCATTGCAGCCCTTACCTGCCCACGCTTGCTTCAGCCTCCATTGAAGCCTGTCGCGTCCTCTCAAGCATCTTTCAACCGCCGCCATCTGATTACCACTCTGGTCTCTGTCTCTACCCCTTCTTTCATCGATTTCTCTCTGCCATGTTCTTCTGATTTTGTTGCTCTTCCTATTGCTGAAGCTCGCGGTCTGTTCCAGATGCCCCCTGTTCGTCTCGTCAATCGGTACTTTCTGGTGAGGGCAGGGGAATCAGAATTCGATAGCTTTGGTATAATTAACACAAACCCAGTTGCAAAAACATCAGTTGATAGCGGATTGTCTGAGGTAGGGAAGAAGCAAACTGTTAAAGCGGCTTTCAAATTGAAAGAAATGGGGGCTTGTGACAATGGCTGCTGGATTTGGCCCTCTATTACGCAGAGAGCTTATCAAGCAGCTGAGATTATTGCATCAGTTAATGGTGTGAATCGAAGTTATATAGTTCCTGAATATAGTTTTCTTGATGCCCGTGGGCTTGGAGCTTATGAAGGCAAGAGATTGGAGTCTGTTTCAGAAGTATATGCTTCAGATACCATCTCTTCACGGATCAAACCTCCTCCAATTGATGATGGAACCCCGAACGAGAGCGTATCTGATGTGTTCGTTCGTGTAACGCAACTGATGTCGATTCTCGAAACGCAGTACTCTGGTGATACTATCATCATTGTGTCGCCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTTTAATCGGCCTTGACTTGCGAAGGCACCATGATCTTTCCTTTGCGCCCGGGGAGGTTCGCTTTGTTGATATAAGTAGTATCCCTTCCTATAAGCAACCAGCTTCAGCTGTTTATAAATGTTTAAACCCTCCTAATTCCCAACGCCATCCCTCTCTATGCTTCTTCTTCCCCTTCTTCAATTCCTTCTCCTTTTCCATCTCTCTGTTCTTCAATCATTCAACCCCACAAACAATTTCTGCCCAAAACCACTTCTTCTTTGATTTCCCTTTCCCTTGTGCTTCTTCAATCCTTTTCCTTCCCTCCCATGGCGACCCTTTAGCCATTGTCGGCAGCTCCACCTCCGAGTGTTCTTGGGTGTTCTTGTTTAGTTCTTGGGTGTTCTTGTTGAGTTCTTGGGCATGGCCATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCAATGCTTGCTACTAGTATGTATCCTTTGTCACTCTCTATCAGATCATGACATTGTAAGAGTGCGATTAATCATTGTGAGTATCAATTGGAGAAGGTACAATACCTGTAGATATCCTTTGCACATATGGATCGTGGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTCTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTAGATTTCGGATGGCAGCAGCGATATGCTCGATTCTGTGGACGAGTTGTGGTTCTTTCTATTCTATCTCTATTGCTGTACCCCTTTCTATGTGCGTGGACTGTAATTGGGACTCTCTGGTTTAGAGATGCTAAAGATTGTCTGCCTGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTATTCAGCTACTGTGCCCTCCTTTGCGTTGCCTGCTTGTCAATTGGAAAGTGGTTAGCGCGTCGACAAGCTCACTTGTTCCGTGCGCAACAAGGCATACCGGTATCGGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATTTGAAGCTGCAGGATTGGAAACACGAGGCATTGGCCAAGATGCTACTGGGTACCATCCCGGGTTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGACCTTCCAAAGTTCAGGCTAAAGGCTGTGCCAACAGATTGCAGTGAATGCCCCATTTGCCTTGAAGAGTTCCGTGTAGGGAATGAGGTTCGTGGTATGCCATGTGCTCACAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAACGTTAAATGTCCTCGATGTCGCTCCTCCGTCTTCCCAAATCTCGACCTCAGCGCTCTATCAAACCTACATTCAGACACAGAACAAACATCTGCCATTGCTTTCGTAACAAGCCAACCTTCAAGTCTGTCAAGATCGGCTCCGAGCCACCACGCATCTCATACCGAAAACACAGCAGGCCTCTATACCGACACGACCTTAGATGCCATGGAGAACGGAAGCTCACCCATTTTGAACCATCTTAACCAGAATTGCTCAGCCCCCTAA 2283 46.43 MYASSSVSIAALTCPRLLQPPLKPVASSQASFNRRHLITTLVSVSTPSFIDFSLPCSSDFVALPIAEARGLFQMPPVRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEVGKKQTVKAAFKLKEMGACDNGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKRLESVSEVYASDTISSRIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLSFAPGEVRFVDISSIPSYKQPASAVYKCLNPPNSQRHPSLCFFFPFFNSFSFSISLFFNHSTPQTISAQNHFFFDFPFPCASSILFLPSHGDPLAIVGSSTSECSWVFLFSSWVFLLSSWAWPFEESISNGTMGSSCQCLLLVCILCHSLSDHDIVRVRLIIVSINWRRYNTCRYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCVACLSIGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQDLPKFRLKAVPTDCSECPICLEEFRVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSAIAFVTSQPSSLSRSAPSHHASHTENTAGLYTDTTLDAMENGSSPILNHLNQNCSAP 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8143395 8148936 - CmoCh13G009220.1 Cmo13g00922 394977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00922 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 685 IPR013083 -
Cmo13g00922 760 SUPERFAMILY Phosphoglycerate mutase-like 82 280 IPR029033 -
Cmo13g00922 760 SMART ring_2 639 679 IPR001841 -
Cmo13g00922 760 Pfam Ring finger domain 638 680 IPR001841 -
Cmo13g00922 760 CDD RING-H2_RNF111_like 638 682 - -
Cmo13g00922 760 SUPERFAMILY RING/U-box 620 688 - -
Cmo13g00922 760 Pfam Histidine phosphatase superfamily (branch 1) 84 278 IPR013078 -
Cmo13g00922 760 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 427 745 IPR044793 GO:0004842|GO:0010182
Cmo13g00922 760 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 427 745 - -
Cmo13g00922 760 Gene3D - 81 289 IPR029033 -
Cmo13g00922 760 ProSiteProfiles Zinc finger RING-type profile. 639 680 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00922 Cmo-Chr13:8143395 Cmo06g00159 Cmo-Chr6:852721 1.32E-13 dispersed
Cmo10g00136 Cmo-Chr10:625356 Cmo13g00922 Cmo-Chr13:8143395 2.78E-172 wgd
Cmo11g00101 Cmo-Chr11:539352 Cmo13g00922 Cmo-Chr13:8143395 1.81E-167 wgd
Cmo13g00922 Cmo-Chr13:8143395 Cmo15g00339 Cmo-Chr15:1581401 2.45E-11 wgd
Cmo13g00922 Cmo-Chr13:8143395 Cmo18g00124 Cmo-Chr18:879086 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00922 K16284 - csv:101222360 600.512