Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00925 ATGGCCTTTCAAAACCATGATGCCTCTACCATCGTCACCGACCATACTCGACCCATCACAATCGTTCAAAATGGCGCCTCTTTTGTGCCAACTTTTCCCGATTGCTACGTCAATATTGATGAAGAATTTCCTGGGGAGGCACATGTGTATAAGCAAGAGAAGGTCATATTCCAAGGCAAATCCCAGTATCAAGATTTTTTTGTTTTTCAGATTGCTATATTGGATGGCTGCCTTCAGCTAACAGAGAAGGATGAGTGTTCTTATCAAGAAATGCTCACTCATCTCCCACTCTGTTCTATTCCCAATCCCAGAAAGGTTTTGTTGATTGGAGGCGGGGATGGAGGAATTCTTCGAGAAATATCCCGACATGATTCCGTTGAGCAAATTGACATTTGTGAGCTTGACGAAATGGTGATAAACGTTTACAAGGAGTTTTTCCCGGACATTGCCATCGGGTACGTGGATCCTCGTGTGAATGTACACATAGGCGACGGTGTGGCCTTCATCAAGTCTGTTCCTCCAGGCACCTATGATGCTATCATAATTGATGCATTTCCAGGGATGGGAGCTTATGCAACCGAGCTTTCGGATGAAGACTTCCTTAAGTCGATCGCAAAGGCTCTGAAGCCGGGTGGAGTACTGTCGGCTCAAGCAGACAGCGTGTGGATCAAGAATTTCACCATGGAAGACACCATAACTCGCTGTCGTAACATCTTCAAGGGCTCTGTAAACTACGCTTGGACCTCTGTTCCTTCATATCCAAGTGGGTCAATCGGCTTCGTGCTCTGTTCGACCAACGGTCCTTCGGTCGTCGACTTCAAACACCCGGTGAACCAGTTGGACCCAGAAAAATTTGGTGTTGCAAATGGACCCCCTAAGTTCTACAACTCAGAGATCCATACTGCTGCATTTTGTCTCCCTGCGTTCGCTAAGTCGAAGATGGGTTCTACGTATGCATGA 960 46.56 MAFQNHDASTIVTDHTRPITIVQNGASFVPTFPDCYVNIDEEFPGEAHVYKQEKVIFQGKSQYQDFFVFQIAILDGCLQLTEKDECSYQEMLTHLPLCSIPNPRKVLLIGGGDGGILREISRHDSVEQIDICELDEMVINVYKEFFPDIAIGYVDPRVNVHIGDGVAFIKSVPPGTYDAIIIDAFPGMGAYATELSDEDFLKSIAKALKPGGVLSAQADSVWIKNFTMEDTITRCRNIFKGSVNYAWTSVPSYPSGSIGFVLCSTNGPSVVDFKHPVNQLDPEKFGVANGPPKFYNSEIHTAAFCLPAFAKSKMGSTYA 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8161792 8163681 + CmoCh13G009250.1 Cmo13g00925 394980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00925 319 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 36 265 IPR030374 -
Cmo13g00925 319 Gene3D Vaccinia Virus protein VP39 82 317 IPR029063 -
Cmo13g00925 319 PANTHER SPERMIDINE/SPERMINE SYNTHASE 29 314 IPR001045 GO:0003824
Cmo13g00925 319 Hamap Polyamine aminopropyltransferase [speE]. 37 315 IPR001045 GO:0003824
Cmo13g00925 319 PANTHER SYNTHASE 1, PUTATIVE-RELATED 29 314 - -
Cmo13g00925 319 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 312 IPR029063 -
Cmo13g00925 319 Pfam Spermidine synthase tetramerisation domain 41 82 IPR035246 -
Cmo13g00925 319 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 106 119 IPR030373 -
Cmo13g00925 319 CDD AdoMet_MTases 127 214 - -
Cmo13g00925 319 Gene3D Spermidine synthase, tetramerisation domain 32 81 IPR037163 -
Cmo13g00925 319 Pfam Spermine/spermidine synthase domain 85 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00925 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - tcc:18603873 414.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00140 Cmo13g00925 CCT
Cmo10g00140 Cmo13g00925 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00925 Cmo-Chr13:8161792 Cmo18g00810 Cmo-Chr18:9533908 7.65E-111 dispersed
Cmo10g00140 Cmo-Chr10:648065 Cmo13g00925 Cmo-Chr13:8161792 1.78E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g719 . . Bda06g00587 . Bpe12g00587 . . . Cmo13g00925 . Cma10g00133 . Car10g00126 . . Cpe20g00230 . Bhi02g00426 . . . . . . Cla06g01652 Cam06g1836 Cec06g1887 Cco06g1892 Clacu06g1796 Cmu06g1738 Cre06g2556 Cone2ag0896 . . . Lsi02g00359 Csa01g00837 Chy12g01282 Cme12g01707 Blo13g00052 Blo15g00274 . . Bpe07g00828 . . Bma08g00171 Sed08g2494 Cmo10g00140 . Cma13g00898 . Car13g00738 . . Cpe18g00837 Bhi08g01589 Tan05g2027 Cmetu12g1070 Lac10g0432 Hepe07g2240 . . Cla01g01286 Cam01g1442 Cec01g1480 Cco01g1447 Clacu01g1353 Cmu01g1257 Cre01g1279 Lsi06g01542 Csa01g00162 Chy02g02568 Cme02g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00925 Cmo_Chr13 FPKM 20.190092 19.792027 16.836668 17.124176 67.605469 68.53624 67.773643 1.950433 1.755455 2.509004