Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00928 ATGGGAGAAGTCAAACGTAAAAGAGGTCGAAAGCCGAAAAATTCCAAGGCGGATTCTCTAGATTTTCCTCCGCCGACCACTGCTACCGCCACCAGTGTTGCGATGGTTATGGACGACGTTTTTTCAGTCAGCAACGTCGAGCTCATGGACCCGGCCTCCACTTCTAAACCTCACCAGAACCGCCGTGGGAGGCCGAAGAAGCTTTCGAAACATTTGGAAAATCCCGACAAGTTCCCGCAATTGTCTCCTTCTAGACGTGGCCCTCGTGGTGTCGAAAATGGCGAATTTACCGCTTCCGGCGACGTCTTTCCATCTGATATCGCTTTGGAACGGGTGCAGCCGGAGTGGCCGGGCATCGTGAGAGTCGTGCCGGCGATGGATGCTGTGGTCAAGGTATTTTGTGTGCACACGGAGCCGAATTTCTCACTTCCTTGGCAGAGAAAGAGACAATATAGTTCGAGTAGCAGTGGATTTGTGATTGGTGGAAGGAGAGTGCTCACTAATGCTCATTCCGTCGAGCATCATACCCAGGTTAAGCTTAAGAAGCGTGGGTCGGATACGAAGTACTTGGCGACCGTACTTGCGATTGGAACTGAATGCGATATCGCAATGCTTACTGTTGATGATGACGAGTTTTGGGTGGGAGTTTCACCGGTAGAATTTGGGGAGTTACCTGCACTGCAAGATGCAGTAACTGTTGTTGGTTACCCAATTGGAGGTGATACAATTTCTGTCACAAGTGGGGTTGTATCGCGGATAGAGATCCTGTCTTATGTTCATGGGTCTACCGAGCTTCTCGGTCTGCAGATAGATGCTGCTATAAACTCTGGTAATTCTGGTGGGCCTGCCTTTAATGATAAAGGAAACTGTGTGGGCATTGCATTTCAGTCACTCAAGCATGAAGATGCAGAAAATATAGGTTATGTCATACCAACGCCAGTTATCTTGCATTTTATACGGGATTACGAGAAGAATGGAGCATATACAGGCTTTCCAATTCTTGGTCTTGAGTGGCAGAAAATGGAAAATCCTGATCTTTGTGAGGCTATGGGGATGAAAAAAGATCAGAAGGGTGTCCGTATTAGACGTATTGATCCCACTGGCCCAGAATCCAAAGTTTTGAAGCCATCAGATATTATTCTCGGCTTTGATGGGGTTGATATTGCTAATGATGGAACAGTTCCTTTCCGGCACGGTGAGCGTATAGGATTCAGTTACCTTGTCTCCCAGAAATATACTGGTGATAGTGCAACAATAAAAGTTCTGCGCAACTCTGAGACACTCAGTTTTAATTACCAGCTTGCAACATACAGAAGGCTCATTCCTGCACATAATGAGGGCAAACCCCCTTCTTATTACATTATTGCAGGATTTGTTTTTTCCACTGTCTCCGTTCCTTATCTCCGTTCTGAGTACGGAAAGGATTATGAATATGAAGCTCCAGTCAAACTATTGGACAAATTATTGCATTCAATGCCACAATCACCAGACGAGCAGCTAGTGGTGGTTTCTCAGGTACTCGTGGCTGATATCAACATTGGATATGAAGACATTGTTAACACCCAGGTTCTTGCTTTCAATGGTAAACCTGTGAAGAACCTCAAGAGCTTGGCTAACATGGTTGAAAGTTGCGATGATGAGTTTTTGAAGTTCGATTTAGAATATCAACAGATAGTTGTCCTCCGTACAAGCACAGCGAAAGCAGCCACTTTAGATATTCTGGCCACACACTGCATACCCTCAGCTATGTCTAACGATCTCAAGACCTAA 1770 45.76 MGEVKRKRGRKPKNSKADSLDFPPPTTATATSVAMVMDDVFSVSNVELMDPASTSKPHQNRRGRPKKLSKHLENPDKFPQLSPSRRGPRGVENGEFTASGDVFPSDIALERVQPEWPGIVRVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWVGVSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVILHFIRDYEKNGAYTGFPILGLEWQKMENPDLCEAMGMKKDQKGVRIRRIDPTGPESKVLKPSDIILGFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGDSATIKVLRNSETLSFNYQLATYRRLIPAHNEGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNTQVLAFNGKPVKNLKSLANMVESCDDEFLKFDLEYQQIVVLRTSTAKAATLDILATHCIPSAMSNDLKT 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8171363 8177014 - CmoCh13G009280.1 Cmo13g00928 394983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00928 589 Pfam Trypsin-like peptidase domain 156 293 - -
Cmo13g00928 589 SUPERFAMILY Trypsin-like serine proteases 125 326 IPR009003 -
Cmo13g00928 589 Gene3D - 113 212 IPR043504 -
Cmo13g00928 589 PRINTS HtrA/DegQ protease family signature 157 169 IPR001940 GO:0004252|GO:0006508
Cmo13g00928 589 PRINTS HtrA/DegQ protease family signature 185 205 IPR001940 GO:0004252|GO:0006508
Cmo13g00928 589 PRINTS HtrA/DegQ protease family signature 227 251 IPR001940 GO:0004252|GO:0006508
Cmo13g00928 589 PRINTS HtrA/DegQ protease family signature 264 281 IPR001940 GO:0004252|GO:0006508
Cmo13g00928 589 PRINTS HtrA/DegQ protease family signature 373 385 IPR001940 GO:0004252|GO:0006508
Cmo13g00928 589 PANTHER - 4 589 - -
Cmo13g00928 589 SUPERFAMILY PDZ domain-like 357 438 IPR036034 GO:0005515
Cmo13g00928 589 Pfam PDZ domain 441 586 IPR041517 -
Cmo13g00928 589 Pfam PDZ domain 351 431 IPR001478 GO:0005515
Cmo13g00928 589 Gene3D - 331 439 IPR036034 GO:0005515
Cmo13g00928 589 PANTHER PROTEASE DO-LIKE 9 4 589 - -
Cmo13g00928 589 MobiDBLite consensus disorder prediction 1 27 - -
Cmo13g00928 589 Gene3D - 214 324 IPR043504 -
Cmo13g00928 589 MobiDBLite consensus disorder prediction 48 98 - -
Cmo13g00928 589 CDD PDZ_serine_protease 332 429 - -
Cmo13g00928 589 Gene3D - 440 589 IPR046449 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00928 K25897 DEGP9; protease Do-like 9 [EC:3.4.21.-] - csv:101219688 1103.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00928 Cmo18g00119 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00380 Cmo-Chr8:2359627 Cmo13g00928 Cmo-Chr13:8171363 7.57E-171 dispersed
Cmo12g00942 Cmo-Chr12:8762892 Cmo13g00928 Cmo-Chr13:8171363 1.98E-139 dispersed
Cmo13g00928 Cmo-Chr13:8171363 Cmo15g00348 Cmo-Chr15:1622528 6.78E-14 dispersed
Cmo13g00928 Cmo-Chr13:8171363 Cmo18g00119 Cmo-Chr18:834269 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g706 Blo04g00740 . . . . . . . Cmo13g00928 Cmo18g00119 . . . . . Cpe20g00227 . . . . . . . . . . . . . . . Cone2ag0889 Cone16ag0121 . . Lsi02g00353 Csa01g00829 Chy12g01288 Cme12g01714 . . . Bda14g00819 . Bpe15g00630 . . Sed08g2488 . . Cma13g00902 Cma18g00151 Car13g00742 Car18g00145 Cpe09g01042 . Bhi08g01579 Tan05g2035 Cmetu12g0872 Lac10g0425 Hepe07g2245 . . Cla01g01391 Cam01g1452 Cec01g1487 . Clacu01g1476 Cmu01g1371 Cre01g1286 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004589 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00928 Cmo_Chr13 FPKM 171.549408 186.529648 129.826477 133.552734 80.659645 69.045319 80.157593 150.077179 150.966629 151.609329