Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00930 ATGATCACCTCCCTTCCCATCCTCCCCGTGGACTCCAAGCTCGCCGTCGGTTATTACCAAAAGACATGTCCCAACTTCGAGAAGGTCATTCGAGAGACCGTGACGAGTAAGCAAATCACTAGCCCTGTCACTGCGGCTGGGACCCTTCGTCTCTTCTTCCACGACTGTTTTGTTGATGGTTGTGATGCTTCTGTCCTCATTGCCTCTAATTCCTTTAACAAAGCGGAGCGTGAGGCTGAAATCAATCACTCCCTTTCTGGTGATGCGTTTGACGTGATCACTCATGCTAAGACCCATCTTGAATTATCGTGTCCTGGTATTGTTTCTTGTGCTGATATCTTGGCTCAAGCGACACGTGATCTAGTGGTGATGGTGGGAGGGCCGTTTTATAATGTCCGTTTGGGACGTAAAGACGGAATGGTTTCGAAATTGGAACACGTGGAAGGGAACCTCCCTGAAGTGAAGCACACGGTGGATGAACTTGTGGATTTCTTTGGGCAGAGAGGATTCAGCATCCAAGAAATGGTGGCTCTCTCCGGCGGCCACACCATTGGGTTCTCTCATTGCAAGGAATTCTCGGACCGGCTGTTCAATTTCAGCGCCACCACACCCACCGACCCCGACATCTACCCCAAGTTCGCCGACAAGCTGAAGGAAATGTGCGCCAATCGCGACAAGGATACGTCCATGTCAGCATTCAACGACGTGATGACACCTGGCAAATTCGACAATATGTACTACCAGAATCTCCCACGTGGACTCGGCCTACTGGCCACCGACCATGCCCTGGTTAAGGACCCTAGGACGAAGCCGTTCGTGGACCTTTACGCCGTTAATCAGACGGCGTTTTTTCACGACTTTGCTCATGCTATGGAGAAACTCAGCGTTTTCGAAGTTAAGACGGGAAGGAAGGGAGAGGTTCGACGAAAGTGCGACCTCTTTAATTCCATCAAGACGTGA 960 50.73 MITSLPILPVDSKLAVGYYQKTCPNFEKVIRETVTSKQITSPVTAAGTLRLFFHDCFVDGCDASVLIASNSFNKAEREAEINHSLSGDAFDVITHAKTHLELSCPGIVSCADILAQATRDLVVMVGGPFYNVRLGRKDGMVSKLEHVEGNLPEVKHTVDELVDFFGQRGFSIQEMVALSGGHTIGFSHCKEFSDRLFNFSATTPTDPDIYPKFADKLKEMCANRDKDTSMSAFNDVMTPGKFDNMYYQNLPRGLGLLATDHALVKDPRTKPFVDLYAVNQTAFFHDFAHAMEKLSVFEVKTGRKGEVRRKCDLFNSIKT 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8182766 8183725 + CmoCh13G009300.1 Cmo13g00930 394985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00930 319 ProSitePatterns Peroxidases active site signature. 45 56 IPR019794 GO:0004601
Cmo13g00930 319 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Haem peroxidase superfamily signature 126 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Haem peroxidase superfamily signature 108 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Haem peroxidase superfamily signature 174 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Haem peroxidase superfamily signature 45 59 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PANTHER - 10 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 ProSiteProfiles Plant heme peroxidase family profile. 13 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PANTHER PEROXIDASE 41 10 319 - -
Cmo13g00930 319 PRINTS Plant peroxidase signature 23 42 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 47 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 126 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 107 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 88 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 PRINTS Plant peroxidase signature 173 185 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 SUPERFAMILY Heme-dependent peroxidases 14 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo13g00930 319 CDD secretory_peroxidase 13 314 IPR033905 GO:0004601|GO:0042744
Cmo13g00930 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 174 184 IPR019793 -
Cmo13g00930 319 Gene3D Peroxidase, domain 2 152 294 - -
Cmo13g00930 319 Gene3D - 17 315 - -
Cmo13g00930 319 Pfam Peroxidase 32 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00159 Cmo-Chr10:719459 Cmo13g00930 Cmo-Chr13:8182766 5.13E-150 wgd
Cmo11g00119 Cmo-Chr11:619758 Cmo13g00930 Cmo-Chr13:8182766 6.71E-153 wgd
Cmo13g00930 Cmo-Chr13:8182766 Cmo14g00639 Cmo-Chr14:3216333 1.91E-140 wgd
Cmo13g00930 Cmo-Chr13:8182766 Cmo18g00116 Cmo-Chr18:820299 0 wgd
Cmo13g00930 Cmo-Chr13:8182766 Cmo04g02855 Cmo-Chr4:20358428 1.68E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00930 K00430 - csv:101220163 544.273