Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo13g00931 | ATGGTTGGCCATGGCAATCACAGGTTGAAACTCTCCATCTTCCACCACCGATCTTCGTCGGACTCGAAACCTGAACGGCCGGTAGAGTATCCCAGAGAGTATCTCTGCGAAATTTCCAAGTCGTTAATGGCGGATCCGGTTGTCGTCTCCTCCGGTCAGACGTTCGAGCGCCTCTGTATTCAAGTTTGTCAAGAATTGGGGTTTTCGCCGAAGCTTGAAGATGGATCGAGGCTGGATTTCACCTCTGTTATAACCAACAGAAATATGAGATTCACCATTCTCAAATGGTGCGATGACAACGGAATCGAACACCCACGACCCCCTCTGTACACCTCTATTGAACTCGTTGTTCGTCAATTAATGGAGAAGGAGAGACAAGAGAATCGATTCGAGGCTTCTGATAGCGAGTTGTTAAGAGGCGTCGCCGATAAACCGGCGGGAGTTGCAGTTCATGCGACTACGGAGGTTGGGTTCCGAGTCAACCGATTTCAACTCAACTCGCCGCCGGAAACGGAGGAGATCGTACGTGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTTGTTACGCCGCTCATTCTTCGTCTTCCTCGAGCTTCGACAGAGGAAGTTCCGATTCGTATACACCAAATTCAGAAGAGGAATCTCGTCTCATCATGAAATTCAGAAGCGGCGATGAATGCGAACAACAAGAAGGAGTGATTTCCCTAAGAAAATTGACCAAATCCAACGAATCAACTAGGGCTTCTATATGCACAAAGGAATTCCTCGCCGCACTACTTCCTCTGGTTTCATCCAGATCTACAAATATCCAGATCAATGCCGTTGCTTCCGTCGTGAATCTCTCCCTCGAGAAATCGAACAAATTGAAGATCCTCCGAGCAGGATTCGTTCCGTCATTAATCGACGTTTTAGACAGCGGATACGCGGAATCTCAAGAACACGCAGCCGGTGCTCTGTTCAGTTTATCATTAGAGGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTACTGATGAACACACTCCGATCCGAGAGTGAGCGGACGAGGAACGATTCGGCCCTTTGTTTGTACCATTTGACTCTAAACCCTAGCAACCGTGTGAAACTAGTGAAACTCGGCGCCGTTCCAATACTTCTATCGTTGACGAGAATCGACGGTTCTGCGAGCCGAATCCTGCTGATTCTATGCAATCTCGCCGTCTGTGCCGACGGAAGATCGGCGATGCTGGATGCGAACGCGGTGGATTGTTTGGTCGGGATGTTGAGGGAGAAAGAGATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTAGCGCTGCACGCATTGAGTCAAGGAGGATTCCGATTCAAGGGATTGGCGAAGGCGGCCGGCGCGGTAGAGGTTCTAAGAGAGGTTGAAGAAAGGGGAAGCGAGAGGGCGCGGGAGAAGGCCAAGAGGATCTTGGAGATGATGAGAACTGGCGGGAGCGGTTCCGTTGAGATCGAAGGCGTCCGCCGACATGGGCTCGACGCCGGTGGAGTCAGCTGGACCGGCCGGGCTGGTGCTGCCTTGAACCGGTATTCTACCAATACTACTAAGTTTTGA | 1599 | 50.72 | MVGHGNHRLKLSIFHHRSSSDSKPERPVEYPREYLCEISKSLMADPVVVSSGQTFERLCIQVCQELGFSPKLEDGSRLDFTSVITNRNMRFTILKWCDDNGIEHPRPPLYTSIELVVRQLMEKERQENRFEASDSELLRGVADKPAGVAVHATTEVGFRVNRFQLNSPPETEEIVRESTILPFKTQPSCYAAHSSSSSSFDRGSSDSYTPNSEEESRLIMKFRSGDECEQQEGVISLRKLTKSNESTRASICTKEFLAALLPLVSSRSTNIQINAVASVVNLSLEKSNKLKILRAGFVPSLIDVLDSGYAESQEHAAGALFSLSLEDENKMAIGILGALPVLMNTLRSESERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIDGSASRILLILCNLAVCADGRSAMLDANAVDCLVGMLREKEMDSESTRENCVVALHALSQGGFRFKGLAKAAGAVEVLREVEERGSERAREKAKRILEMMRTGGSGSVEIEGVRRHGLDAGGVSWTGRAGAALNRYSTNTTKF | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 8185126 | 8186724 | - | CmoCh13G009310.1 | Cmo13g00931 | 394986 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo13g00931 | 532 | MobiDBLite | consensus disorder prediction | 193 | 214 | - | - | |
| Cmo13g00931 | 532 | Gene3D | - | 395 | 493 | IPR011989 | - | |
| Cmo13g00931 | 532 | Gene3D | - | 215 | 394 | IPR011989 | - | |
| Cmo13g00931 | 532 | ProSiteProfiles | U-box domain profile. | 29 | 103 | IPR003613 | GO:0004842|GO:0016567 | |
| Cmo13g00931 | 532 | SUPERFAMILY | RING/U-box | 16 | 106 | - | - | |
| Cmo13g00931 | 532 | SMART | Ubox_2 | 33 | 96 | IPR003613 | GO:0004842|GO:0016567 | |
| Cmo13g00931 | 532 | PANTHER | U BOX DOMAIN-CONTAINING | 1 | 497 | - | - | |
| Cmo13g00931 | 532 | SUPERFAMILY | ARM repeat | 222 | 486 | IPR016024 | - | |
| Cmo13g00931 | 532 | MobiDBLite | consensus disorder prediction | 193 | 215 | - | - | |
| Cmo13g00931 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 327 | 365 | IPR000225 | GO:0005515 | |
| Cmo13g00931 | 532 | Pfam | U-box domain | 31 | 100 | IPR003613 | GO:0004842|GO:0016567 | |
| Cmo13g00931 | 532 | SMART | arm_5 | 243 | 284 | IPR000225 | GO:0005515 | |
| Cmo13g00931 | 532 | SMART | arm_5 | 326 | 366 | IPR000225 | GO:0005515 | |
| Cmo13g00931 | 532 | SMART | arm_5 | 367 | 405 | IPR000225 | GO:0005515 | |
| Cmo13g00931 | 532 | SMART | arm_5 | 406 | 449 | IPR000225 | GO:0005515 | |
| Cmo13g00931 | 532 | SMART | arm_5 | 285 | 325 | IPR000225 | GO:0005515 | |
| Cmo13g00931 | 532 | CDD | RING-Ubox | 35 | 71 | - | - | |
| Cmo13g00931 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 296 | 333 | IPR000225 | GO:0005515 | |
| Cmo13g00931 | 532 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 38 | 1 | 497 | - | - | |
| Cmo13g00931 | 532 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 104 | IPR013083 | - | |
| Cmo13g00931 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 337 | 379 | IPR000225 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo13g00931 | Cmo-Chr13:8185126 | Cmo04g01075 | Cmo-Chr4:5408500 | 2.03E-35 | dispersed | |
| Cmo10g00160 | Cmo-Chr10:725771 | Cmo13g00931 | Cmo-Chr13:8185126 | 0 | wgd | |
| Cmo11g00121 | Cmo-Chr11:626277 | Cmo13g00931 | Cmo-Chr13:8185126 | 0 | wgd | |
| Cmo13g00931 | Cmo-Chr13:8185126 | Cmo15g00326 | Cmo-Chr15:1512571 | 8.30E-155 | wgd | |
| Cmo13g00931 | Cmo-Chr13:8185126 | Cmo04g02856 | Cmo-Chr4:20359053 | 1.78E-148 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo13g00931 | - | - | csv:101221183 | 876.7 |