Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00935 ATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTGTTCCTCCAGACACCACACTTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCCGCATCGCGATTAGGTTTAATTCTAGGTTTTGGTGTGTACAGGTGTGGAAAGGCGGCGGATCTACGATATCGTGAATGTCTTGGAAAGCGTCGGGGTGGGATTTCTTTTCTGAAGTTATTTTGTGTTTGTTCTGATTCCGTGTATGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAAGGAGAATTGTAGTGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAAGACGACGATGAAAGATTTTCCAATCCGACTGGAAGCCAGAACTCAACTGCAGCCGTGCCGAAATCATCTTCATCATCGCTGAAAGCCGTTGGCTGTCCTCCGCCAACATTTGTACGGTTTGGCCATCAGGGCATGAGGTTCATTGGTTCCATTTCAGACCTTTATATTTGTTGTACTAAACAAAACAATAGAAGGGAAAAGTCATTGGCTCTCCTGACGCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAGTATGATTTCCCTTGATGAAGCAGCAAAACTCTTATTAGGAGATGGTCACAATTCATCAATAATGAGAACAAAGGTAAGGAGGCTATATGACATTGCGAATACCCATACAGCTGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGGGTGAGGGGTAAGGTCAAGAATGAGCCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCCGAAAGTTCTGCCTATCAGGGTTTAAATCATTGTCTCAATGTGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAGTTTGGACCGTTTTCTCCAATAACAGTAGCTAAGGTTAGTGTCTCAGATAATAACAATGTGAAGCGGAGTCATGACTGGGAAAGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGGTAATCCCTAA 1215 44.12 MAALPSSSALPDSCSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGLILGFGVYRCGKAADLRYRECLGKRRGGISFLKLFCVCSDSVYVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSSLKAVGCPPPTFVRFGHQGMRFIGSISDLYICCTKQNNRREKSLALLTQNFVKLFICSHVSMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNVQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFSPITVAKVSVSDNNNVKRSHDWESLSSTFRPQYHNQGNP 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8209724 8212229 - CmoCh13G009350.1 Cmo13g00935 394990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00935 404 MobiDBLite consensus disorder prediction 381 404 - -
Cmo13g00935 404 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 57 - -
Cmo13g00935 404 SMART E2F_TDP_2 213 283 IPR003316 GO:0005667|GO:0006355
Cmo13g00935 404 SMART E2F_TDP_2 23 114 IPR003316 GO:0005667|GO:0006355
Cmo13g00935 404 MobiDBLite consensus disorder prediction 340 363 - -
Cmo13g00935 404 PANTHER TRANSCRIPTION FACTOR E2F 7 57 IPR015633 GO:0000978|GO:0006357
Cmo13g00935 404 MobiDBLite consensus disorder prediction 132 178 - -
Cmo13g00935 404 PANTHER TRANSCRIPTION FACTOR E2F 97 402 IPR015633 GO:0000978|GO:0006357
Cmo13g00935 404 Gene3D - 18 83 IPR036388 -
Cmo13g00935 404 Gene3D - 207 285 IPR036388 -
Cmo13g00935 404 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 97 402 - -
Cmo13g00935 404 SUPERFAMILY Winged helix DNA-binding domain 215 284 IPR036390 -
Cmo13g00935 404 MobiDBLite consensus disorder prediction 385 404 - -
Cmo13g00935 404 Pfam E2F/DP family winged-helix DNA-binding domain 215 268 IPR003316 GO:0005667|GO:0006355
Cmo13g00935 404 MobiDBLite consensus disorder prediction 157 178 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00164 Cmo13g00935 CCT
Cmo13g00935 Cmo18g00114 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00164 Cmo-Chr10:743630 Cmo13g00935 Cmo-Chr13:8209724 3.22E-92 wgd
Cmo13g00935 Cmo-Chr13:8209724 Cmo18g00114 Cmo-Chr18:783508 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10862 PF02319 E2F_TDP 4.00E-10 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00935 K09391 - csv:101219210 560.836