Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00936 ATGTTTCACAGAAACATTAATGGAGGAGTAAACAAGGCGAAGAAGAAGATTGTTTTTCTCCATCTTTGCTCACCAAAACGCTGCTTGTCGCTCTCATGTCGCGATTTCACTACCGAATCGGAACCCCAATCTAGCTCCGCCCTAGATGCCACCGCTGTGGATATCGCCAATCTTGTCCTAGAATCTGACCCAAAAATCTTGAGGGGAATCCTCCATGGATCACAAGTTCAATTTACGCCTGAACTTGTGAACAAGGTTCTCAAGCGCCTATGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACAACTCGAGTACCATCCATCTTATGCCCATTCCTCGTCCTCCTTCGACCATGCCATCGACATTGCAGGCCGTATGCGCGACTACAAGTCTGTATGGGCTCTAGTGGCTCGAATGCGAGCTCGGCGGATTGGACCCAGTTCGAAAACCTTCGCAATTATTGCTGAGCGGTTCGTAGGCGCTGGAAAACCAGACAGAGCGATCAAGGTTTTCTTGTCTATGCGGGAGCATGGCTGTCATCAGGATCTTCATTCATTTAACACCATTCTTGATATCCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACCATCTATTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGCTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACACCGAAAGCGCTAGAGATTTTGAAGGAGATGGTGGATAGAGGTTTGACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAGTTCTTTTTGCAAATGAAAGAGAGGGAAGTTGAAATTGATGTTGTTACTTACACTACAATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCTCGGAAGGTTTTTGATGAAATGATTGGCGAAGGTGTTCTTCCTTCAACAGCTACTTACAATGCTATGATACAGGTTTTGTGTAAGAAAGATAGCGTGGAGAATGCTGTAATGTTGTTTGAGGATATGATGAACAGGGGTTATGTGCCAAATTTGACCACATATAATGTGCTTATAAGAGGATTGTGTCATGCAGGCAATATGGATAAGGCTACGGAGTTCATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAATGTTGTCATTCGATACTTTTGTGATGCTGGTGACATAGAAAAGGGGTTGAGTGTGTTTGAGAAGATGGGGCACATGGGTTGTTTACCAAATTTGGATACTTATAATGTTGTAATTAGTGCAATGTTTGTGAGGAAAGAGTCTAAAGATCTAGTGGTTGCTGGGAAGCTGTTGGTTGAGATGATCGATAAAGGATTCCTCCCTCGAAAGTTCACTTTTAATCGAGTCCTAAACGGGCTTTTGCTAACAGGTAATCAAGCTTTTGCCAATGAGATATTGAGAATGCAGAGCCAATGTGGTCGTCTTCCTCGCAAATTTAAGTTATGA 1518 42.29 MFHRNINGGVNKAKKKIVFLHLCSPKRCLSLSCRDFTTESEPQSSSALDATAVDIANLVLESDPKILRGILHGSQVQFTPELVNKVLKRLWFHGPKALQFFKQLEYHPSYAHSSSSFDHAIDIAGRMRDYKSVWALVARMRARRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCHQDLHSFNTILDILCKSKRVEMAYNHLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEILKEMVDRGLTPTITTYNIVLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMIGEGVLPSTATYNAMIQVLCKKDSVENAVMLFEDMMNRGYVPNLTTYNVLIRGLCHAGNMDKATEFMERMKTDGCEPNVQTYNVVIRYFCDAGDIEKGLSVFEKMGHMGCLPNLDTYNVVISAMFVRKESKDLVVAGKLLVEMIDKGFLPRKFTFNRVLNGLLLTGNQAFANEILRMQSQCGRLPRKFKL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8213747 8215264 - CmoCh13G009360.1 Cmo13g00936 394991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00936 505 Gene3D Tetratricopeptide repeat domain 384 502 IPR011990 GO:0005515
Cmo13g00936 505 Gene3D Tetratricopeptide repeat domain 79 208 IPR011990 GO:0005515
Cmo13g00936 505 SUPERFAMILY HCP-like 162 330 - -
Cmo13g00936 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Cmo13g00936 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cmo13g00936 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cmo13g00936 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cmo13g00936 505 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 28 505 - -
Cmo13g00936 505 Pfam PPR repeat 220 250 IPR002885 -
Cmo13g00936 505 Pfam PPR repeat 162 180 IPR002885 -
Cmo13g00936 505 Pfam PPR repeat 186 205 IPR002885 -
Cmo13g00936 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Cmo13g00936 505 PANTHER OS02G0679200 PROTEIN 28 505 - -
Cmo13g00936 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Cmo13g00936 505 Gene3D Tetratricopeptide repeat domain 316 383 IPR011990 GO:0005515
Cmo13g00936 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Cmo13g00936 505 Pfam PPR repeat family 322 371 IPR002885 -
Cmo13g00936 505 Pfam PPR repeat family 252 299 IPR002885 -
Cmo13g00936 505 Pfam PPR repeat family 392 439 IPR002885 -
Cmo13g00936 505 Gene3D Tetratricopeptide repeat domain 209 315 IPR011990 GO:0005515
Cmo13g00936 505 TIGRFAM PPR: pentatricopeptide repeat domain 151 183 IPR002885 -
Cmo13g00936 505 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Cmo13g00936 505 TIGRFAM PPR: pentatricopeptide repeat domain 326 358 IPR002885 -
Cmo13g00936 505 TIGRFAM PPR: pentatricopeptide repeat domain 220 253 IPR002885 -
Cmo13g00936 505 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Cmo13g00936 505 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Cmo13g00936 505 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00936 - - - cmos:111431631 1017.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00219 Cmo13g00936 CCT
Cmo10g00309 Cmo13g00936 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00936 Cmo-Chr13:8213747 Cmo07g01021 Cmo-Chr7:5058503 4.21E-13 dispersed
Cmo13g00936 Cmo-Chr13:8213747 Cmo15g00663 Cmo-Chr15:3240927 1.31E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014283 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00936 Cmo_Chr13 FPKM 5.6 6.214421 4.334017 4.71364 5.291542 5.150125 6.445153 4.613919 4.005441 3.432854