Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00938 ATGGAGGAATCGAAAGCGGCGGCGTACTACGAGGAGCTCACTCGTAAAGGAGAAGGAGCGGCAAGGTTCAAACGAGGCCTTGGTTTTTCCTCCTCCGACTCCAATACTGATGTGGTCTCCGCGTCCAAGGGATCCGCTCTGCCTTCGTCGTCGTCCTTTCTCAGTTCTTTTGTTAAAGCCTCAAGCCCTTCCAAGGCCTCCGAGTTTGAAAAGCAAGCGCAGCTCGAGGCCATTCAGAACAAGCTCAAGAAGAAGAAACCAAGCTCTCCCGATGTGGATGAGAGAGGCCCTAGGGCTTTGGAGAGAGATCGTCGGAAATCGAGCCCTAGACGAAGGTCTTTGAGTAAAGAGAGGGAGAGACATTCGCATTCGAGGAGGCGGAGTACGAGTAGAGATAGGGAGAGACATTCAAGGCGGCGAAGTAGAAGCCGAGATAGGTACGGGGATAAGCATAGGGATAAGGGTAGGGAGAGGAGTGATTCAGACAGGGACAGACGTCGTCGACGGAGTAGAAGCTCGTCGCGAGAGAGGAAGAGATCGGACGACAATAGAAGTAAGGGAGGGGAAAAACAGAAAGACCATAAAGTTGATAGAAGGAAGACTGAAAGTGTTGATTATTCAAGATTAATCGAAGGATATGACAAGATGTCTCCAGCTGAAAGAGTCAAAGCAAAGATGAAACTACAACTTGCTGAAACTGCTGCAGAAGATGATGCAACATTAGTAAAGCATATTGGACAAAGCTTTCGATTCTCCGCTATTGAGGCTAGAAAAGAAGAGCAAATCAAAGCTGCTCACGACGAGGCGATGTTTGGAGCACCAGTGGGACAACTATTAAGTACAACCGATAACGAGGTCGAGCTGGAGAACGAAAAGTCGAAGGAATCATGTGATGGCGGTGTGGCAACAAATCTATTGAGTGAGAAGTCGGTAAGAACTACACCAAGGAACTGCAATGGCCATCTTGATTCACCAATTTCTTCACTCGCAATGGGTCTTTGGCTCCTGATAATTACAGACACCCAGAACATCAGTATCAAGTCTGCCCGTATCCAACGTTGGAAAAGTGTACTTTTTGTAGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGGTTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGACCAAGGAGAATAGAGCCGCTGGAGTCCTGGATAACTTTGCTGAGGGAGAGAAGTATACCGAGCATTTCCTGAGGAAATTCGTGCGCAACAAGTCACCAGAAATTATGCCGTCAATCAACAACTTCTTCACAGACCCAAGTCGAAACTAA 1323 48.0 MEESKAAAYYEELTRKGEGAARFKRGLGFSSSDSNTDVVSASKGSALPSSSSFLSSFVKASSPSKASEFEKQAQLEAIQNKLKKKKPSSPDVDERGPRALERDRRKSSPRRRSLSKERERHSHSRRRSTSRDRERHSRRRSRSRDRYGDKHRDKGRERSDSDRDRRRRRSRSSSRERKRSDDNRSKGGEKQKDHKVDRRKTESVDYSRLIEGYDKMSPAERVKAKMKLQLAETAAEDDATLVKHIGQSFRFSAIEARKEEQIKAAHDEAMFGAPVGQLLSTTDNEVELENEKSKESCDGGVATNLLSEKSVRTTPRNCNGHLDSPISSLAMGLWLLIITDTQNISIKSARIQRWKSVLFVVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEGEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8220083 8226655 - CmoCh13G009380.1 Cmo13g00938 394993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00938 440 MobiDBLite consensus disorder prediction 25 203 - -
Cmo13g00938 440 MobiDBLite consensus disorder prediction 146 203 - -
Cmo13g00938 440 Pfam NADH-ubiquinone reductase complex 1 MLRQ subunit 361 425 IPR010530 -
Cmo13g00938 440 PANTHER SERINE/ARGININE-RELATED PROTEIN 53 1 239 IPR034604 GO:0000380|GO:0000398
Cmo13g00938 440 PANTHER SERINE/ARGININE-RELATED PROTEIN 53 234 310 IPR034604 GO:0000380|GO:0000398
Cmo13g00938 440 MobiDBLite consensus disorder prediction 77 115 - -
Cmo13g00938 440 MobiDBLite consensus disorder prediction 28 69 - -
Cmo13g00938 440 MobiDBLite consensus disorder prediction 116 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00938 - - - csv:101218261 355.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00076 Cmo-Chr5:296747 Cmo13g00938 Cmo-Chr13:8220083 4.16E-39 dispersed
Cmo13g00938 Cmo-Chr13:8220083 Cmo14g01185 Cmo-Chr14:9851889 2.23E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g679 Blo04g00748 . . . . . . . Cmo13g00938 . . . . . . Cpe20g00219 . . . . . . . . . . . . . . . Cone2ag0879 . . . Lsi02g00343 Csa01g00815 Chy12g01302 Cme12g01726 . . . Bda14g00827 . Bpe15g00624 Bma03g00801 . . . . Cma13g00911 . Car13g00751 . . . Bhi08g01444 . . . . . . Cla01g01401 Cam01g1463 Cec01g1505 . Clacu01g1487 Cmu01g1382 Cre01g1299 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012736 1 3 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00938 Cmo_Chr13 FPKM 20.539017 21.245846 2.885269 3.040919 0.209802 0.0 0.0 0.288935 0.349806 0.294411