Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00940 ATGGCGCTATCACCGTATTTGTCCGTGCCGAATCATCTCGAAATTTCTACAACGTTTCAGCAGCGGTATTTACTGTCTCAACAACTTCCATTTCTCTCAAACCGTTCCAATTTCAGTGTTCGCCGTAGATTTTTCTCAGATAACTGGAGCTTGTTCTCCGACGTTGGGAAGTGTAGAGCGAAGCCGAAGGATCTCGTTCTTGGAAATCCGTCGGTAATTGTTGAGAAAGGCAAGTACAGCTATGACGTTGAAACCCTAATTAATAAGCTCAGTAGCCTCCCGCCTCGAGGCAGCATAGCACGTTGCCTCGATATCTTTAAGAATAGGCTTTCGCTCAATGACTTCAGCTTGGTTTTTAAGGAATTCGCGGCGCGCGGGGACTGGCAACGTTCGTTACGCCTCTTCAAATACATGCAGCGTCAGATATGGTGCAAGCCGAACGAGCACATCTATACCATCATGATCAGCTTGCTCGGCCGCGAAGGATTGCTAGAGAAATGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTAATACGTAGCGTATTTTCTTATACCGCTTTGATAAATGCCTACGGGCGCAATGGTCAGTACGAAATCTCACTTGAACTTCTTGAAAGGATGAAAAGAGATAGAGTGTCGCCTAATATATTGACTTACAATACCGTGATAAATGCATGCGCTAGAGGTGATTTGGATTGGGAGGGATTGTTGGGATTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTTGTTACCTATAATACTTTGCTTAGTGCATGTGCTGCCCGCAGTTTAGGCGATGAGGCAGAGATGGTCTTCAAGACTATGATAGAAGGAGGGATAGTCCCTGAGATAACAACATATAGTTATATTGTCGAAACATTTGGAAAATTGGGTAAGCTCGAGAAAGTTGCTATGCTGCTAAAAGAAATGGAGTCCGAAGGGTATTTGCCCGATATATCATCCTACAATGTGTTAATAGATGCACATGCAAAATCCGGGTCGATTAAGGAGGCAATGGACGTGTTTAAGCAGATGCAAGCTGCAGGATGTGTGCCAAATGCATCCACTTATAGCATTCTATTGAATTTATATGGAAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTTCTTGAAATGAAAGAGAGCAGTGCCGAGCCAGATGCAACTACTTACAACATTCTCATTCGAGTATTTGGCGAGGGTGGATACTTCAAGGAGGTTGTAACTCTGTTTCATGATTTGGTGGAGGAGAAGATTGACCCAAATATGGAGACATACGAGGGCTTAGTGTTTGCTTGTGGGAAGGGGGGGCTGCACGAGGATGCCAAGAAAATTTTACTTCACATGAATGAGAAAGGAATGGTTCCAAGTTCTAAGGCATATGGTGGACTGATTGAAGCATACGGACAGGCTGCATTGTATGATGAAGCTCTTGTTGCCTTTAACACAATGAACGAAGTGGGAAGTAAGTCAACCGTTGATACCTATAATTCGCTAATTCACACATTCGCTAAGGGTGGACTCTACAAGGAGCTTGAAGCAATCATATCGAGAATGGGAGAGTCTGGCATTTCAAGGAATGCAAAGTCATTTAGTGGTATTATTGAATGTTACAGGCAAAGTGGTCAGTTTGAAGAAGCTATAAAGGCCTTTGTTGAGATGGAAAAAATGAGATGTAAACCTGATGAGCAGACACTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTAGATGAGAGCAAGGAGCAGTTTCATGAAATTAAAGCTTCAGGAATAGTGCCTAGTGTATTGTGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGGCAGGTGGGATAATGCCTATGAGTTACTCGATGAGATGATTAAAAACAGGGAATCTGGTATTCATCAAGTCATTGGCCAGATGATCAAGGGAGGTTACGATGATGATTCTAATTGGCAGATGGTTGAGTATGTTTTTGACAAACTTAACGCTGAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGCTAGAAGCACTTTGGTGGCTTGGCCAGAAAGGACGTGCTGCGAGGGTTCTCACTGAAGCAACAAAACGAGGCCTTTTCCCTGAACTTTTCCGCAAAAGCAAACTTGTGTGGTCTGTGGATGTCCACAGAATGTGGGAAGGCGGTGCATATACGGCTATATCTCTTTGGGTTAACAAAATGAATGAAATGCTTATGGATGGGGAGGAGCTGCCTCAGGTTGCAGCTGTAGTAGTAGGAAGGGGGTGGCTGGAGAAGGACACAACCGCACAAAACTTGCCTATCCCAAGGGCTGTCTATTCATTCCTGCAGGATAATGTGTCGTCCTCCTTCACTTTTCCTGGGTGGAACAACGGTCGAATCGTCTGCCAACCGTCTCAACTGAAGCAGCTTCTCACAGACACAGAAGCATCAACTAGTGAAATTGTTACTCTAAATAACTCCCCATTAAATCTTCCAGAAGCGAAGATATCCAGATCTGGTATAAGCAATGACAAATACGAAGATGTTGATTCTAAATCAAGTAACAGGACGGGAACTGAGCTTCTGACTGCAACTGGTTTTCTTGCAACATTGCTTGCGATGATTCACTCACAAAGCCAATTTCATCTTGATCCACGGAGAAGATGCATGCCCAAGGAACAGGTCAGTGTTTTTGTAGCTTTAGAATTTATATTCTTTACTGCATATGGAAAAGCTGTTTATGGTAATCGTTAG 2757 43.71 MALSPYLSVPNHLEISTTFQQRYLLSQQLPFLSNRSNFSVRRRFFSDNWSLFSDVGKCRAKPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYEISLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARSLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIDAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKILLHMNEKGMVPSSKAYGGLIEAYGQAALYDEALVAFNTMNEVGSKSTVDTYNSLIHTFAKGGLYKELEAIISRMGESGISRNAKSFSGIIECYRQSGQFEEAIKAFVEMEKMRCKPDEQTLEAVLGVYCFAGLVDESKEQFHEIKASGIVPSVLCYCMMLAVYAKNGRWDNAYELLDEMIKNRESGIHQVIGQMIKGGYDDDSNWQMVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRKSKLVWSVDVHRMWEGGAYTAISLWVNKMNEMLMDGEELPQVAAVVVGRGWLEKDTTAQNLPIPRAVYSFLQDNVSSSFTFPGWNNGRIVCQPSQLKQLLTDTEASTSEIVTLNNSPLNLPEAKISRSGISNDKYEDVDSKSSNRTGTELLTATGFLATLLAMIHSQSQFHLDPRRRCMPKEQVSVFVALEFIFFTAYGKAVYGNR 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8235433 8242191 + CmoCh13G009400.1 Cmo13g00940 394995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00940 918 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 33 827 - -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Cmo13g00940 918 SUPERFAMILY TPR-like 476 634 IPR011990 GO:0005515
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Cmo13g00940 918 Gene3D Tetratricopeptide repeat domain 561 635 IPR011990 GO:0005515
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 633 IPR002885 -
Cmo13g00940 918 ProSiteProfiles Smr domain profile. 720 809 IPR002625 -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cmo13g00940 918 Gene3D Tetratricopeptide repeat domain 354 439 IPR011990 GO:0005515
Cmo13g00940 918 Gene3D Tetratricopeptide repeat domain 91 232 IPR011990 GO:0005515
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Cmo13g00940 918 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 33 827 - -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Cmo13g00940 918 Pfam PPR repeat 599 630 IPR002885 -
Cmo13g00940 918 SMART SMR_2 717 806 IPR002625 -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Cmo13g00940 918 Pfam Pentatricopeptide repeat domain 416 476 IPR002885 -
Cmo13g00940 918 Pfam Pentatricopeptide repeat domain 241 301 IPR002885 -
Cmo13g00940 918 Pfam Pentatricopeptide repeat domain 373 406 IPR002885 -
Cmo13g00940 918 Pfam Pentatricopeptide repeat domain 170 228 IPR002885 -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Cmo13g00940 918 Pfam Pentacotripeptide-repeat region of PRORP 481 595 IPR033443 -
Cmo13g00940 918 Gene3D Tetratricopeptide repeat domain 441 560 IPR011990 GO:0005515
Cmo13g00940 918 Gene3D Tetratricopeptide repeat domain 233 352 IPR011990 GO:0005515
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cmo13g00940 918 Pfam PPR repeat family 322 367 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 606 633 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 220 253 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 536 569 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Cmo13g00940 918 TIGRFAM PPR: pentatricopeptide repeat domain 255 287 IPR002885 -
Cmo13g00940 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00940 - - - mcha:111008838 1565.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00468 Cmo-Chr8:2892177 Cmo13g00940 Cmo-Chr13:8235433 1.04E-89 dispersed
Cmo08g01268 Cmo-Chr8:7985725 Cmo13g00940 Cmo-Chr13:8235433 1.41E-18 dispersed
Cmo13g00940 Cmo-Chr13:8235433 Cmo17g01003 Cmo-Chr17:8633355 2.44E-88 dispersed
Cmo17g00385 Cmo-Chr17:2400553 Cmo13g00940 Cmo-Chr13:8235433 2.71E-19 dispersed
Cmo01g00772 Cmo-Chr1:4004553 Cmo13g00940 Cmo-Chr13:8235433 2.90E-06 transposed
Cmo02g01007 Cmo-Chr2:6143525 Cmo13g00940 Cmo-Chr13:8235433 1.30E-21 transposed
Cmo03g00817 Cmo-Chr3:6585334 Cmo13g00940 Cmo-Chr13:8235433 6.41E-08 transposed
Cmo14g00620 Cmo-Chr14:3121716 Cmo13g00940 Cmo-Chr13:8235433 2.01E-17 transposed
Cmo13g00940 Cmo-Chr13:8235433 Cmo18g00111 Cmo-Chr18:769494 8.17E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g622 . . . . Bpe12g00529 . . . Cmo13g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00101 Csa01g00580 Chy12g01516 Cme12g01962 . . . . . . . . Sed08g2099 . . Cma13g00913 . Car13g00753 . . . Bhi08g01121 Tan05g2402 Cmetu12g1770 . . . . Cla04g01173 Cam04g1230 Cec01g1741 Cco01g1787 Clacu04g1257 Cmu04g1236 Cre01g1531 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008894 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00940 Cmo_Chr13 FPKM 0.555961 0.499941 0.0 0.0 0.0 0.0 0.0 0.0 0.035955 0.0