Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00941 ATGCCGATGACGGAGGCCGGAGACGTCGAGATGGATGCCGCCGGCGTCACCAAGGAGATCATGTTGTTTGGAGTGAGAGTCGTGGTGGATCCGATGAGGAAGAGCGTCAGTATGAACAACCTCTCTCAGTATGAGCATCCTCCTTCTGAGGCCTCCAATGAAGACAACGGCCGCAACACTAAGAGTAATGTCTCTGCAGCTGCTGGTTACGCTTCTGCGGACGATGCCGTTCCTAATTCCGGTGGGATTCGCGAGCGCGAACGCAAGCGAGGAGTACCGTGGACGGAGGAAGAGCACAAACTTTTCTTGCAGGGATTGCAGAAAGTGGGGAAAGGAGACTGGAGAGGAATCTCGAGGAATTTTGTTAAGACTCGAACCCCAACTCAGGTTGCTAGCCACGCCCAGAAATACTTCCTGCGTCGAAGCAACCTCAATCGTCGCCGCCGTAGATCCAGCCTCTTCGATATCACCACGGATTCGGTAAAGGTGGCTGCTGGGGAAGAGCAAATTCAACTTCAAGACAATTCCTCCCAATTCCAATACTTGTTGCCACCTCCACCTCCACCACCTGAAACTGGCAATGTAAATGGATATCATCCTGTGATGCCAACTTTTCCTTTGCCTGTTTGCCCTGCAATTTTACCTGTACCAATTCCTATGGACAACCTCCCACTCAGGCATGATAACCTGGAGAATGATACATCATCAACTGCTGAAGTTATGCCGCTCAATCCAACCACACCTGAGCTTAACTTGAATTCTGGAGCTCTTTCTCTTAACCTCGACTCGGCCACTTCATTGACGAAACACCCTGCTTTCCAAGGAATTTCAATTGTACATCCCCACCTTTGGATTCTTCATTTGACGTTTATTAGGTTGGTGACTGTTGTCTTGTGCTTGAAGATAGCATTTGATCCTCTATTGTGGTTGAAGGGGGACCATGACATGATGGGCCGAAGTAACAGTACAGATGATACTGAGATAATCGGTTTCGCTCGGCTCTGCGGCTCCTGCAGCCGTCTACTTCCCGGAATCAGAGGCGTCGCCGCTGAATTTCCGCCAGATCGCTCTCTCGTCGCCGAAGTTCCGGCGGTTGCTTCATTCGCCGTATTTGCGAAAGAAATCGAGCTCGAAAGCTTGATTAAATTCGCAAGCAACAACATGGACTTCTCACAAAGCGATTCACTCGATCTCCTCTCTTTACCGATCATAACTCCGGGCTTTAGTGCCACGTGGCATGTGGTTATTTCTTCTATCCGTCCTACCAAACATTTTATGATAAACTATTCCAATTTGGGAATTTGTTTAAAACTCCCATATGAAAACAGAGGAGAGGCAAATGGGAAAATGGTCAAAATTGTAAATTGGAGCAAATTGAGATGCTATGATGTTCCCCCTTGGTTGGGAAGGGGAGGAATGACCGTTGTTATTTCAGTTAGGGAAAAAAGAAATAAAGGAACAATGGCGACGAAACGTTCTTTCACCCGTTTTGTAGAACAGGAGATGGGAAAGTTCCCACATTTCGTAGTTTGTGCAGTCCTTGAATGGGTTCTCATAATTTTGCTTTTCATTGATGGGTTTGTTGCATTTTTGGCAAGCGAATTCGCCAAGTTCTTTGAATTGCGAGTTCCTTGTTTGTTCTGCACCAGAATCGACCATGTTTTTGTTAACAAAAATGCAGATTTCTACTACAACAATGCCATTTGTGAAAGCCACAAGAAGGATGTTTCATCTCTTGCATATTGCCACAACCACAAGAAACTCTCTGACATTCGGAAGATGTGTGAGGTCTGTCTTCTCTCATTCGCAACCGAGAAGGAATCCGATTGCAATACCTACAAGTCGCTCGTTGGAATATTGCACAAGGATCTTGAATGTTTTGTGGAGGACGATAATTGTCAAGTTGTGAGCTTGCCGCCCGTGGGGAAGAAAGATGAAGGCCTGCAAATGGAGAAAGTGGGTGGTGGTGGTGATGATTGTTGTTGTTCATGTTGTGGGGAATCATTGAAGGTTAAATCCTCCAATTCAAAAGGGAAAAATGGGAGTACCTTTTCACAAGCTCCTGCTCCTTCGCCACGAGCTGGGTTTGTGCCTGCTTTCAGAAACGAGGACAAAACTAGCTTGGAATTACCGCACGTTAATTATACCGAACTCAAATTGTTGTCAGATAGTGAGTCGGAGTTCGTCGAAGACGATGAAGGTTTACATGGAAGAAATCTTGACGCTCATCAATTTAAGGAGGATGTGAAACCTGTTAAAGTGCCATTGTTACCTGAACCTGAGGATGTGCATGAAAGTTCGAGGACCCCCATCTTTGGTAGAGGAAACAAATTTTTTGGTATCCCACTTACGGATTCTGATAATACCAGTCCCAGATGGGCTATTAGGATCTCTAGAAAATCACCACTTGAAAGACCAGAGCTCCCAGCTGAGAATTATGAAGCAGATATGTTGGGGCCAGGAGACAATGATTCCATTTTGAATTGCTTGAAAAGACAAGTTCGGATAGATCGAAAATCGCTCATGGAGTTATACATGGAACTGGACGAAGAAAGAAGCGCTTCAGCCGTGGCAGCAAACAATGCAATGGCCATGATTACTCGCTTACAAGCCGAAAAGGCGGCCGTTCAGATGGAAGCTTTGCAGTACCAAAGAATGATGGAAGAACAGGAAGAGTATGACCAGGAAGCCTTACAAGCTACAAACGATTTGCTTGCTAAGAGAGAGGAAGAAATCAGGGACTTGGAGGTTGAACTTGAAGCTTACAGAGAAAAATATGGATACCTTGAGGAAGGTTGTCTTCAGATGTCTGAAGGAGAGATGTCTGATGAAGATTACCAAGAATTCAAGTCACAAGTCTATTTATCTTCTGATGAGAAATCTGAATGTAATACACCTTTTAGTCTCAATGGAAGAGAGAAGGAAAATTTTAAGAATTTTGACAGGACGATTATACCCTCCGGGTTGAAAATTGAAAGAGAAAATAGCAAAGAAGAAAGTACAAACAATCATGGGGTAGCCTTGCCATTCTCCCAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGACAGTACAAACAATCATGGGGTAGCCTTGCCATTCTCCCAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGACAGTACAAACAATCATGGGGTAGCCTTGCCATTCTCCCAAGGGGAGGCTGAAGGAGAAGATAGCAAAGAAGAAAGTACAAACAATCATGAGGTAGCCCTGCCATTCTCCCAAGGGAAGTCTGAAGGAGAAGATAGCAAAGAAAAAAGTATAAACAATCATGGCGTAACCCTGCCATTCTCCCAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGAAAGTACAAACAATCATGCGGTCCAAGGAGAAGATAGCAAAGAAGAAGGTACAAACAATCATGGGGTAGCCCTGACATTCTCCCAAGGGGAGGCTGAAGGAGAAGATAGCAAAGAAGAAAGTACAATCAATCATGGGGTGGCCCTGCCATTCTCCCAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGAAAGTACAGACAATCATGGGGTAGCCTTGCCATCCCAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGAAAGTACAAACAATCATGGGGTAGCCTTGCCATCCAAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGAAAGTACAAACAAGCATGGGGTAGCCCTGCCATTCTCCCAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGTAAGTACAAACAATCATGGGGTAGCCCTGCCATTCTCCCAAGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGTACGTACAAACAATCATGGGGTAGCTCTGCCATTCTCCCAGGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGTACGTACAAACAATCATGGGGTAGCTCTGCCATTCTCCCAGGGGAAGGCTGAAGGAGAAGATAGCAAAGAAGTAAGTACAAACAATCATGGGGTAGCCTTGGCATTCTCCCGAGGGAAGGCTGAAGGAGAAGACCAAAATGAACCACTGACAAACTTTAAAGGAGAAAAAACATATCTTTTAGGCCGCTTGAAAAGGTCAAAGAAGAACATTAACTCCTTATCCTCAGAGGATCTAGCTTCGTCCCTGCAACCAAGATCTGCCAGTGTCAACCGAGTAGATGAAGTTACAGGTATTGTGTTATATCAATAA 4209 45.26 MPMTEAGDVEMDAAGVTKEIMLFGVRVVVDPMRKSVSMNNLSQYEHPPSEASNEDNGRNTKSNVSAAAGYASADDAVPNSGGIRERERKRGVPWTEEEHKLFLQGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVKVAAGEEQIQLQDNSSQFQYLLPPPPPPPETGNVNGYHPVMPTFPLPVCPAILPVPIPMDNLPLRHDNLENDTSSTAEVMPLNPTTPELNLNSGALSLNLDSATSLTKHPAFQGISIVHPHLWILHLTFIRLVTVVLCLKIAFDPLLWLKGDHDMMGRSNSTDDTEIIGFARLCGSCSRLLPGIRGVAAEFPPDRSLVAEVPAVASFAVFAKEIELESLIKFASNNMDFSQSDSLDLLSLPIITPGFSATWHVVISSIRPTKHFMINYSNLGICLKLPYENRGEANGKMVKIVNWSKLRCYDVPPWLGRGGMTVVISVREKRNKGTMATKRSFTRFVEQEMGKFPHFVVCAVLEWVLIILLFIDGFVAFLASEFAKFFELRVPCLFCTRIDHVFVNKNADFYYNNAICESHKKDVSSLAYCHNHKKLSDIRKMCEVCLLSFATEKESDCNTYKSLVGILHKDLECFVEDDNCQVVSLPPVGKKDEGLQMEKVGGGGDDCCCSCCGESLKVKSSNSKGKNGSTFSQAPAPSPRAGFVPAFRNEDKTSLELPHVNYTELKLLSDSESEFVEDDEGLHGRNLDAHQFKEDVKPVKVPLLPEPEDVHESSRTPIFGRGNKFFGIPLTDSDNTSPRWAIRISRKSPLERPELPAENYEADMLGPGDNDSILNCLKRQVRIDRKSLMELYMELDEERSASAVAANNAMAMITRLQAEKAAVQMEALQYQRMMEEQEEYDQEALQATNDLLAKREEEIRDLEVELEAYREKYGYLEEGCLQMSEGEMSDEDYQEFKSQVYLSSDEKSECNTPFSLNGREKENFKNFDRTIIPSGLKIERENSKEESTNNHGVALPFSQGKAEGEDSKEDSTNNHGVALPFSQGKAEGEDSKEDSTNNHGVALPFSQGEAEGEDSKEESTNNHEVALPFSQGKSEGEDSKEKSINNHGVTLPFSQGKAEGEDSKEESTNNHAVQGEDSKEEGTNNHGVALTFSQGEAEGEDSKEESTINHGVALPFSQGKAEGEDSKEESTDNHGVALPSQGKAEGEDSKEESTNNHGVALPSKGKAEGEDSKEESTNKHGVALPFSQGKAEGEDSKEVSTNNHGVALPFSQGKAEGEDSKEVRTNNHGVALPFSQGKAEGEDSKEVRTNNHGVALPFSQGKAEGEDSKEVSTNNHGVALAFSRGKAEGEDQNEPLTNFKGEKTYLLGRLKRSKKNINSLSSEDLASSLQPRSASVNRVDEVTGIVLYQ 1402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8245096 8252723 + CmoCh13G009410.1 Cmo13g00941 394996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00941 1402 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Cmo13g00941 1402 PANTHER MYOSIN-BINDING PROTEIN 2 490 1028 IPR039306 GO:0017022
Cmo13g00941 1402 SMART sant 90 140 IPR001005 -
Cmo13g00941 1402 ProSiteProfiles GTD-binding domain profile. 825 923 IPR007656 -
Cmo13g00941 1402 Gene3D - 92 144 - -
Cmo13g00941 1402 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Cmo13g00941 1402 MobiDBLite consensus disorder prediction 993 1326 - -
Cmo13g00941 1402 Pfam Zein-binding 830 919 IPR007656 -
Cmo13g00941 1402 MobiDBLite consensus disorder prediction 39 67 - -
Cmo13g00941 1402 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Cmo13g00941 1402 MobiDBLite consensus disorder prediction 1217 1231 - -
Cmo13g00941 1402 PANTHER MYOSIN-BINDING PROTEIN 6-RELATED 490 1028 - -
Cmo13g00941 1402 MobiDBLite consensus disorder prediction 672 692 - -
Cmo13g00941 1402 MobiDBLite consensus disorder prediction 1111 1136 - -
Cmo13g00941 1402 MobiDBLite consensus disorder prediction 672 689 - -
Cmo13g00941 1402 CDD SANT 93 138 IPR001005 -
Cmo13g00941 1402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Cmo13g00941 1402 Coils Coil 859 932 - -
Cmo13g00941 1402 MobiDBLite consensus disorder prediction 39 93 - -
Cmo13g00941 1402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Cmo13g00941 1402 SUPERFAMILY Homeodomain-like 88 142 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00941 - - - cmos:111431458 1756.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00941 Cmo18g00108 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00941 Cmo-Chr13:8245096 Cmo18g00110 Cmo-Chr18:758497 7.16E-110 dispersed
Cmo19g00064 Cmo-Chr19:369184 Cmo13g00941 Cmo-Chr13:8245096 3.14E-22 dispersed
Cmo02g00910 Cmo-Chr2:5611230 Cmo13g00941 Cmo-Chr13:8245096 2.87E-15 transposed
Cmo10g00171 Cmo-Chr10:772495 Cmo13g00941 Cmo-Chr13:8245096 1.48E-63 wgd
Cmo11g00129 Cmo-Chr11:653243 Cmo13g00941 Cmo-Chr13:8245096 8.85E-63 wgd
Cmo13g00941 Cmo-Chr13:8245096 Cmo18g00108 Cmo-Chr18:747658 2.42E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g468 Blo04g00753 . . . . Bpe13g00268 Bma06g00191 . Cmo13g00941 Cmo18g00108 . . . . . Cpe20g00213 . . . . . . . . . . . . . . . Cone2ag0876 Cone16ag0134 . . Lsi02g00337 Csa01g00808 Chy12g01308 Cme12g01733 . . Bda11g01681 . . Bpe15g00619 Bma03g00805 . Sed08g2554 . . Cma13g00915 Cma18g00138 Car13g00756 Car18g00130 Cpe09g01054 . Bhi08g01436 Tan05g2058 Cmetu12g1044 Lac10g0398 Hepe07g2265 . . Cla01g01407 Cam01g1469 Cec01g1512 Cco01g1556 Clacu01g1495 Cmu01g1389 Cre01g1306 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006343 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10863 PF04576 Zein-binding 4.30E-32 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00941 Cmo_Chr13 FPKM 19.320168 21.816647 0.0 0.0 0.320347 0.32569 0.364396 0.136788 0.22878 0.210697
Cmo13g00941 Cmo_Chr13 FPKM 21.473785 23.107698 0.0 0.0 0.384378 0.390977 0.437299 0.153326 0.186092 0.196635