Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00956 ATGGCGGGTCGGAGGGTATACGGCGGCGGCGACGGTGGTAGTATAAGCGGTGTTTCTTCCAATCATAGTGTTTTGCTTCATAATCGTGGAGGGTCTTTTGCTTCTGAGCCGCTTAGTGCTCTTTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCCTCTCTGCTTGATTGTTCTGGTATAGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAACGGATCGAATAGATCGTTCTTTTGCCCGTTCGATAATGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAGAGGCGTTTATCAGCTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAACCGGAGAGGAAAGTTCAGCTAGCCAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCACGGTGGAAAACTAAACAGCTGGAGAAGGACTATGAAGCTCTTCAATCCAGCTATGGAAACCTTAAGGCTGACTATGAAAACCTACTGAAGGAGAAGGATTCATTGAAGGCTGAGGTAAAATTGTTGTTGACATTCATGGATATTCCATTATTGGTGATTAAGCTGTGTTGGATTGTTGTCCTGACAGACAAACTGATACTCAAAGACAAAGAAAGGAGCAACTCTGTGGTGTCTGAAGATGACAAATTTGGTGAAGAACCACCACAAAATTTGGTTGATGAAGCCTCCAAATCTTCAAAGCTGGGTTGTAAGCAGGAGGATATGAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCACTCCTAGACCCCGGAGATTCGTCCTACATTTTCGATCCCGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAAGAATCTTTTGCCTCCTTGCATCTTCCCAAAGCTCGAAGACGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAG 1056 44.98 MAGRRVYGGGDGGSISGVSSNHSVLLHNRGGSFASEPLSALFLSGSSSSTSPSLLDCSGIGSRSMMSFEDIRGGNGSNRSFFCPFDNEDNGDEDLDDYFHHPEKKRRLSADQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGNLKADYENLLKEKDSLKAEVKLLLTFMDIPLLVIKLCWIVVLTDKLILKDKERSNSVVSEDDKFGEEPPQNLVDEASKSSKLGCKQEDMSSVKSDIFDSDSPHYTDGVHSSLLDPGDSSYIFDPDQSDLSQDEEDNLGKNLLPPCIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8306478 8308785 - CmoCh13G009560.1 Cmo13g00956 395011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00956 351 CDD homeodomain 104 160 IPR001356 GO:0003677
Cmo13g00956 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 22 196 IPR045224 GO:0003700
Cmo13g00956 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 213 349 IPR045224 GO:0003700
Cmo13g00956 351 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Cmo13g00956 351 Gene3D - 99 166 - -
Cmo13g00956 351 MobiDBLite consensus disorder prediction 230 258 - -
Cmo13g00956 351 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Cmo13g00956 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 213 349 - -
Cmo13g00956 351 PRINTS Lambda-repressor HTH signature 139 155 IPR000047 GO:0003677
Cmo13g00956 351 PRINTS Lambda-repressor HTH signature 130 139 IPR000047 GO:0003677
Cmo13g00956 351 Pfam Homeobox associated leucine zipper 159 196 IPR003106 GO:0006355|GO:0043565
Cmo13g00956 351 Coils Coil 158 192 - -
Cmo13g00956 351 Pfam Homeodomain 104 157 IPR001356 GO:0003677
Cmo13g00956 351 SUPERFAMILY Homeodomain-like 90 161 IPR009057 -
Cmo13g00956 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 22 196 - -
Cmo13g00956 351 SMART HOX_1 102 163 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00956 - - - bhj:120083292 566.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00956 Cmo18g00098 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02845 Cmo-Chr4:20319544 Cmo13g00956 Cmo-Chr13:8306478 1.04E-40 dispersed
Cmo05g00964 Cmo-Chr5:7757926 Cmo13g00956 Cmo-Chr13:8306478 9.37E-06 dispersed
Cmo13g00956 Cmo-Chr13:8306478 Cmo04g00899 Cmo-Chr4:4526610 6.01E-36 dispersed
Cmo13g00956 Cmo-Chr13:8306478 Cmo15g00296 Cmo-Chr15:1395440 1.38E-36 wgd
Cmo13g00956 Cmo-Chr13:8306478 Cmo18g00098 Cmo-Chr18:676252 2.86E-140 wgd
Cmo13g00956 Cmo-Chr13:8306478 Cmo04g02884 Cmo-Chr4:20528681 2.96E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10864 PF00046 Homeodomain 1.10E-16 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00956 Cmo_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0